| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0181 |
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| Symbol | |
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| ID | 3903150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | + |
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| Start bp | 212677 |
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| End bp | 214077 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637877513 |
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| Product | glutamate decarboxylase |
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| Protein accession | YP_479302 |
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| Protein GI | 86738902 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | [TIGR01788] glutamate decarboxylase
[TIGR03382] Myxococcales GC_trans_RRR domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.305045 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCTAC ATCGTCAGGC GAGTGGTGAT CGGGCGGAGG AGACGGTCGA CGTACGGCCG
CACCTGGCCC CGCTGGGCGA GGAGGTCGTA GTCCCGCGGT TCCGGATGCC GCAGGAGTCG
ACTGCGCCGG AGACGGCCTA CCAGATCGTC CACGACGAGC TGATGCTCGA CGGCAAGGCG
CGGCTGAACA TGGCCACGTT CGTGACCACC TGGATGGACT CGTACGCCGA CCGGCTGATG
GCCGAGTGCG CCCCGAAGAA CATGATCGAC AAGGATGAGT ATCCGCAGAC GGCGGCGCTG
GAGGAACGCT GCGTCAACAT CCTCGCCGAC CTGTGGCACG CCCCCGACGC CGAGCACGCG
GTCGGCTGCT CGACCACGGG GTCGTCCGAG GCGTGCATGC TCGCCGGGCT TGCCATGATC
CGCCGCTGGC GGGCGCGTCG CCGGTCCGCC GGCGCCCCGG CCGACCGGCC GAACATCGTC
ATGGGTGTCA ACGTGCAGGT GTGCTGGGAG AAGTTCGCCC GGTACTGGGA CGTGGAGGCA
CGGCTGGTGC CGATGGCGCC GGGGCGCACG CATCTGACCG CCGACGAGGC CGTGGCGCAC
TGCGACGAGA ACACCATCGG CGTGGTGGCG ATCCTCGGCT CGACGTTCGA CGGCAGCTAC
GAGCCGGTCG CCGGGATCGT GGCCGCGCTG GACCACCTCG CCGCCTCCGG AGGGCCCGAT
GTTCCGGTAC ACGTGGATGC CGCGTCCGGC GGGTTCATCG CCCCGTTCTG CGACCCCGAT
CTGGTCTGGG ACTTTCAGCT CGACCGGGTG GTGTCCATCA ACACCTCCGG GCACAAGTAC
GGCCTGGTCT ATCCGGGGGT GGGCTGGGTG CTGTGGCGCG ACCGGGCGCA TCTACCGGCC
GAACTCGTCT TCCAGGTGGA CTATCTGGGC GGGACGATGC CGACCTTCGC GCTGAACTTC
TCCCGGCCGG GCGCACAGGT CGTCGCGCAG TACTACACCC TGCTGCAACT GGGCTATAAG
GGCTACCGCC GGGTGGCCCA GGCGTGTCGG GACAACGCCC GCTGGCTGGC CGCCGAGGTG
GCGGCGATGG GGCCGTTCGA ACTGGTCTCC GACGGTAGCG GCATTCCGGC GTTCGCGTTC
AAGCTCCGTG ACGACATCAC GGACTACACC GTCTTCGACG TCTCCGAGCT GCTGCGCACC
CGTGGCTGGC TGGTGCCCGC CTACCGGTTC CCGCCGGGGC TGACCGATCT TGCGGTGTTG
CGGGTCGTCG TGCGTCACGA GTTCAGCCGG GACCTCGCCG GGCTGCTCAT CGCCGACCTG
CGCCGGGTGG TGAACCGGCT GGCCCATCCG GGCCGGCGCA CCGCGGGCGA CCGGCCCGGC
GAGTCATCGT TCCACCACTG A
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| Protein sequence | MALHRQASGD RAEETVDVRP HLAPLGEEVV VPRFRMPQES TAPETAYQIV HDELMLDGKA
RLNMATFVTT WMDSYADRLM AECAPKNMID KDEYPQTAAL EERCVNILAD LWHAPDAEHA
VGCSTTGSSE ACMLAGLAMI RRWRARRRSA GAPADRPNIV MGVNVQVCWE KFARYWDVEA
RLVPMAPGRT HLTADEAVAH CDENTIGVVA ILGSTFDGSY EPVAGIVAAL DHLAASGGPD
VPVHVDAASG GFIAPFCDPD LVWDFQLDRV VSINTSGHKY GLVYPGVGWV LWRDRAHLPA
ELVFQVDYLG GTMPTFALNF SRPGAQVVAQ YYTLLQLGYK GYRRVAQACR DNARWLAAEV
AAMGPFELVS DGSGIPAFAF KLRDDITDYT VFDVSELLRT RGWLVPAYRF PPGLTDLAVL
RVVVRHEFSR DLAGLLIADL RRVVNRLAHP GRRTAGDRPG ESSFHH
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