Gene Francci3_0114 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_0114 
Symbol 
ID3903444 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp140305 
End bp141600 
Gene Length1296 bp 
Protein Length431 aa 
Translation table11 
GC content67% 
IMG OID637877447 
Productphage integrase 
Protein accessionYP_479237 
Protein GI86738837 
COG category[L] Replication, recombination and repair 
COG ID[COG0582] Integrase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.646267 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGTCTAC CTCCGGCGTG TCGCCGGTAT CCGTCCAGGT CAGACCATGC ATCGGCCGAT 
GCCAAGAATG ATCAACTTGG CCTATCGACT ACGAAATGGC CCTGGGGCTC GATCTACCAG
CGCGAGAGCG ACGGGATGTG GGTGGGGGCT GCCTACGTCC TCATGCCCGA CGGAACGCAG
CGACGCCGGC CGGTATACGG GAAGACTGCC GACATCGTCC GCGAGAAGCT CACCAAGATG
CAGGCCCAGT CGGACCAGGG CATCCCAGCC GAGGCAACCG GGTGGACCAT GGAGCGGTTC
CTCACCTATT GGCTCAGCGA CATCGTGACG CCGGCTTGCA AACCGCGCAC GGTGCAGGGC
TACGAGGTCA TCGTCCGGAA CTACCTGATC CCGGCGATCG GCAAGAAGCG GCTGAACAAG
CTGAACGGCG TCGATGTGCG GAACCTGCTC AAGCGGGTGC GCGGCACCTG CCTGTGCTGC
CTGCACGGCA CCGACCGCCG CCGCCCTGTG AAGCAGCGTC GCTGCTGCGC CGTTGGGCGC
TGCTGCCACC AGGCGCCGTC CGCCCGGCTC GTGCAGCAGG TCCACAGCGT TCTGCGTAAC
GTCCTCGGCG CCGCAGTACG CGAGGAACTG GTCGGCCGCA ATGTCGCGAA GCTCGCGAAG
GTCTCCGGCC CGACCTACAA GGTGCACCGG GGGCTCAGCG CCGACCAGGC CAGCCACTTG
CTCAAGGCCG CCGCGCACGA CCGGCTATAC GCGCTCTACG TCCTGGCCCT GTACCTGGGG
CTGCGGCGAG GGGAGATCCT TGGCCTGCGC TGGGAGGACA TCGACTTCGA GGACGAGACC
CTTGCCGTGC GGCACTCGTT GCAGCGGGTC GGTGGGCATC TGAGGGTGGT AGCGCCGAAG
ACGCGGACCT CGGAGCGAAC CCTGCCGCTG CTGCCGCTGA TCGCGAAGGT CCTGCGCGAG
CACCAGGCAC GGCAGGACGC GGAACGCGAG ACAGCCGATG TGAACTGGCG GGAGACTGGC
TTCGTGTTCA CCACGGCGAT TGGTACGCCG ATCGAGCCGG ACAACCTTCG ACGTAGCTGG
CTGCCGCTGT GCGGCGTACT CGGCTTGGAG GGCGTGCGCT TCCACGACAT CCGCCACACC
TGCGTCACGC TGCTGCTGAA CGCGGGCGTG CCCCCGCACG TCGTCCGCGA GATCGCGGGG
CACTCCGCGA TCGACGTTAC GATGGAGATC TATGCCCATG CCTCGCTGGA CGACAAGCGG
GCGGCGCTCC AGAAGCTCGT CGACGAGCTG GCGTAG
 
Protein sequence
MRLPPACRRY PSRSDHASAD AKNDQLGLST TKWPWGSIYQ RESDGMWVGA AYVLMPDGTQ 
RRRPVYGKTA DIVREKLTKM QAQSDQGIPA EATGWTMERF LTYWLSDIVT PACKPRTVQG
YEVIVRNYLI PAIGKKRLNK LNGVDVRNLL KRVRGTCLCC LHGTDRRRPV KQRRCCAVGR
CCHQAPSARL VQQVHSVLRN VLGAAVREEL VGRNVAKLAK VSGPTYKVHR GLSADQASHL
LKAAAHDRLY ALYVLALYLG LRRGEILGLR WEDIDFEDET LAVRHSLQRV GGHLRVVAPK
TRTSERTLPL LPLIAKVLRE HQARQDAERE TADVNWRETG FVFTTAIGTP IEPDNLRRSW
LPLCGVLGLE GVRFHDIRHT CVTLLLNAGV PPHVVREIAG HSAIDVTMEI YAHASLDDKR
AALQKLVDEL A