| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0112 |
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| Symbol | metH |
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| ID | 3902946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 135222 |
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| End bp | 139001 |
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| Gene Length | 3780 bp |
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| Protein Length | 1259 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637877443 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_479235 |
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| Protein GI | 86738835 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.937971 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.535785 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGGGT CCAGGTCGGT CGACGAGGTG GCCGTCCATG ACGGTGTGGT CGAGGCCAGC
ACGGTCGGGG CAGACGCGGT CGAGGCCGGC GAGCGGGAGC TCCGGGAGCT GCTGGCCCAG
CGGGTCGTCG TGCTCGACGG GGCTTGGGGC ACGATGCTGC AGAACGCCGG GCTCACCCCG
GCCGACTACC GCACGGAGCG GTTCCGCGAC CACCCGAAGG ACCTCGCCGG CGACCCGGAC
CTGCTGAACC TGACCCGTCC GGACGTGATC CTCGACGTGC ACCGGCAGTA TCTCGCGGCC
GGCGCGGACA TCACCACGAC GAACACGTTC ACCGCGACGA GCATCGGCCA GGCGGACTAC
GGGCTGCAGT CGCTGGTGCG GGAGATGAAT CTGCGGGGCG CGCGGCTGGC CCGCCAGGCC
GCGGACGAGG CCGCCCGGCA GACCGGGGGG CGGCGGTTCG TCGCCGGTTC GATCGGCCCA
TTGAACGTCA CGCTCTCGCT GTCCCCGCGA GTGGAGGACC CGGCGTACCG GGCGGTGACC
TTCGACGAGG TCCGGGCCGC CTACGCCGAG CAGATCCAGG CGTTGGCGGA CGGCGGGGTC
GACCTGCTGC TCATCGAGAC GATCTTCGAC ACGCTCAACG CGAAGGCCGC GATCGCCGCC
GCCCGCGAGG TCGCCCCGCG GCTGCCGCTG TGGATCTCGG TAACGATCGT CGACCTGTCC
GGGCGGACGC TGTCGGGGCA GACCGTCGAG GCGTTCTGGA GCTCCATCGC CCACGCGCAT
CCGCTGGTCG TCGGGGTGAA CTGCTCGCTC GGCGCCGAGG AGATGCGCCC GCACGTCGCC
GAGCTCGCCC GGCTCGCCGG CACGTTCACG GCCTGCCATC CCAACGCCGG CCTGCCGAAC
GCCTTCGGCG GCTACGACCA GACCCCGGAC GAAGCCGGCC AGTTGATCGG CGAATTCGCC
GCCGCGGGCC TGGTCAACAT CGTCGGCGGC TGCTGCGGGA CGACGCCGGC GCACATCGCG
CGGATCGCCG CCGCCGTCGG CGGTGCGCCG CCGCGCCCGG TTCCGACCCC GCCGGCGCGC
ACCCGCTTCA GCGGGCTGGA GCCGTTCGAG ATCGGCGAGG ACACCGGCTT CGTCATGATC
GGGGAGCGCA CCAACGTCAC CGGTTCGGCG CGGTTCCGGC GGCTGATCGA GGCCGACGAC
TACCAGGCCG CCGTGGACGT CGCCCTGGAG CAGGTGCGCG GCGGGGCCAA CCTGCTCGAC
GTCAACATGG ACGCCGACCT GCTCGACAGC GAGCGGGCGA TGACCACGTT CCTGAACCTG
CTCGCCACCG AGCCGGAGGC GGCCCGCCTG CCCATCATGG TCGACAGCTC GCGGTGGAGT
GTGCTGGAGG CCGGGCTGCG CTGCGTGCAG GGCAAGGGCG TCGTCAACTC GATCAGCCTC
AAGGAGGGCG AGGAGCCCTT CCTGGAGCAG GCCCGGCGCA TCCGCGACTA CGGCGCCGGC
GTGGTCGTGA TGGCCTTCGA CGAGCGGGGC CAGGCCGACA CCGCCGAACG CAAGGTGGCG
ATCTGCGCCC GCGCCTACGA CCTGCTCACC CAGCGGGTCG GCTTCCCGGC CGAGGACATC
GTGTTCGACC CGAACGTGCT CGCCGTCGCC ACCGGCATCG CCGAGCACAA CGGCTACGCG
AAGGCGTTCC TCGACGCGTT GCCGCTGATC AAGCAGCACT GCCCGGGAGC GCGGACCAGC
GGCGGCATCT CGAACCTGTC GTTCTCCTTC CGCGGCAACG ACATCGTCCG CGAGGCGATG
CACTCGGCGT TCCTCTTCCA CGCCGTGCGC GCCGGGCTCG ACATGGGCAT CGTCAACGCC
GGCCAGCTCG CCGTCTACCA GGACATCCCC GCCGACCTGC TCGAACTCGT CGAGGACGTG
CTCTTCGACC GGCGCGACGA CGCCACCGAC CGGCTCGTCG CGTTCGCCGA GACCGTGAGC
GGGAGCGGCA CGAAGCGCAC GGTGGACCTG TCCTGGCGCG AGGCGCCGGT CGAGGAGCGC
TTGGCGCACG CGCTCGTGCA CGGCATCGTC GACTTCATCG AGTCCGACAC GGAGGAGGCC
CGGGCGCGGG CGGCCCGCCC CCTCGACGTG ATCGAGGGAC CACTCATGGA CGGCATGAAG
ATCGTCGGCG ACCTCTTCGG GTCGGGGAAG ATGTTCCTGC CGCAGGTGGT CAAGAGCGCC
CGGGTGATGA AGCGCTCGGT CGCCTACCTG GAACCGTTCA TGGAGGCCGA GAAGCAGCAG
GCGCTGCTGG CCGGCACCGG CACCGGCCGT GCCAACCGTG GCAACGGCAC GGTGGTGCTC
GCGACCGTCA AGGGCGACGT GCACGACATC GGCAAGAACA TCGTGGGTGT GGTCCTCGGC
TGCAACAACT ACGAGGTCAT CGACCTGGGG GTCATGGTCC CCGCCACGGT CATCCTCGAC
ACGGCGGTGG CGGAGGGCGC CGACGCGATC GGCCTGTCCG GCCTGATCAC CCCGTCCCTG
GACGAGATGG TCACGGTCGC CACCGAGATG CAGCGCCGCG GGCTGAAACT GCCCCTGCTG
ATCGGCGGTG CCACCACCTC GCGCCAGCAC ACCGCGGTCC GCATCGCCCC CGCCTACGAC
GCCACCACCG TCCACGTGCT GGACGCCTCC CGCGTCGTCG GCGTGGTCTC GGACCTGCTC
GACGCCGACC GGGCCGGGGA GCTCGCCGTG CGTAACCGGG CGGAGCAGAA GCTCCTGCGT
GAGCAGCACG AGAACCGCCA GCAGCGCCCG CTGCTCCCCC TCGCGCAGGC CCGGGCGAAC
CGCGAGCAGG TCACGTTCGA CGACCTGCCC GTCCCCGCCT TCACCGGCGT CCGCGTCGTC
ACCCCGGACC TCGGCGCGCT GCGCTCGATG ATCGACTGGC AGTTCTTCTT CCTTGCCTGG
GAGCTGAAGG GCAAGTTCCC GGCGATCCTG GACCAGCCGG TGGCCCGTGA GCTGTACGAC
GAGGCGAACG TCCTGCTCGA TCAGATCATC GCGGACGGCA GCCTTCAGGC CCGCGGGGTC
TACGGCTTCT GGCCCGCCGT CGCGGAGGAC GACGACATCC TGATCGATCA GATCGACGTC
GGCGCGGTGA ACAGCGCCAG CTCGCCGGGT CAAGGTGGCA CGCCGGGTCC GGGTGGCACG
GGGCGGCTGC GCCTGCCGAT GCTGCGCCAG CAGACGGCCA AGCCCGCGGG GCGGCCGAAC
CGCAGCCTCG CCGACTACCT GGCCCCGGCC GGGGACCACA TCGGCGGGTT CGCCGTGGCC
GTCCACGGCG CCGACACGCT CGCGGCCGGC TTCGAGGCCC GGCAGGACGA CTACCGGGCG
ATCATGGTGA AGGCCCTGGC CGACCGGCTC GCCGAGGCGT TCGCCGAGTA TGTCCACCTT
GAGGCGCGAC GCGCCTGGTT CGAGCCGGAC GCCAAGCCGT CGCTGGAGGA TCTGCACGCC
GAGCGCTTCC GCGGCATTCG TCCCGCCTTC GGCTACCCGG CGAGCCCCGA CCACAGCGAG
AAGCAGGCGC TGTTCGACCT GCTGGACGCC GGGCGGGTGG GGATGGGCCT GACCGAGTCC
TTCGCGATGA CCCCCGCCGC CGCCGTCAGC GGGCTCATCT TCGCCCATCC GTCGTCGCGG
TACTTCACCG TCGGGCGCAT CGGCCGGGAC CAGGTCGAGG ACTACGCCCA GCGGCGGGGC
CTGAAGATCT CCGACGTCGA GCGCTGGCTA CGCCCCAACC TCGCCTACGA TCCCGAGTAG
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| Protein sequence | MAGSRSVDEV AVHDGVVEAS TVGADAVEAG ERELRELLAQ RVVVLDGAWG TMLQNAGLTP
ADYRTERFRD HPKDLAGDPD LLNLTRPDVI LDVHRQYLAA GADITTTNTF TATSIGQADY
GLQSLVREMN LRGARLARQA ADEAARQTGG RRFVAGSIGP LNVTLSLSPR VEDPAYRAVT
FDEVRAAYAE QIQALADGGV DLLLIETIFD TLNAKAAIAA AREVAPRLPL WISVTIVDLS
GRTLSGQTVE AFWSSIAHAH PLVVGVNCSL GAEEMRPHVA ELARLAGTFT ACHPNAGLPN
AFGGYDQTPD EAGQLIGEFA AAGLVNIVGG CCGTTPAHIA RIAAAVGGAP PRPVPTPPAR
TRFSGLEPFE IGEDTGFVMI GERTNVTGSA RFRRLIEADD YQAAVDVALE QVRGGANLLD
VNMDADLLDS ERAMTTFLNL LATEPEAARL PIMVDSSRWS VLEAGLRCVQ GKGVVNSISL
KEGEEPFLEQ ARRIRDYGAG VVVMAFDERG QADTAERKVA ICARAYDLLT QRVGFPAEDI
VFDPNVLAVA TGIAEHNGYA KAFLDALPLI KQHCPGARTS GGISNLSFSF RGNDIVREAM
HSAFLFHAVR AGLDMGIVNA GQLAVYQDIP ADLLELVEDV LFDRRDDATD RLVAFAETVS
GSGTKRTVDL SWREAPVEER LAHALVHGIV DFIESDTEEA RARAARPLDV IEGPLMDGMK
IVGDLFGSGK MFLPQVVKSA RVMKRSVAYL EPFMEAEKQQ ALLAGTGTGR ANRGNGTVVL
ATVKGDVHDI GKNIVGVVLG CNNYEVIDLG VMVPATVILD TAVAEGADAI GLSGLITPSL
DEMVTVATEM QRRGLKLPLL IGGATTSRQH TAVRIAPAYD ATTVHVLDAS RVVGVVSDLL
DADRAGELAV RNRAEQKLLR EQHENRQQRP LLPLAQARAN REQVTFDDLP VPAFTGVRVV
TPDLGALRSM IDWQFFFLAW ELKGKFPAIL DQPVARELYD EANVLLDQII ADGSLQARGV
YGFWPAVAED DDILIDQIDV GAVNSASSPG QGGTPGPGGT GRLRLPMLRQ QTAKPAGRPN
RSLADYLAPA GDHIGGFAVA VHGADTLAAG FEARQDDYRA IMVKALADRL AEAFAEYVHL
EARRAWFEPD AKPSLEDLHA ERFRGIRPAF GYPASPDHSE KQALFDLLDA GRVGMGLTES
FAMTPAAAVS GLIFAHPSSR YFTVGRIGRD QVEDYAQRRG LKISDVERWL RPNLAYDPE
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