Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Francci3_0006 |
Symbol | gyrB |
ID | 3902952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. CcI3 |
Kingdom | Bacteria |
Replicon accession | NC_007777 |
Strand | + |
Start bp | 5916 |
End bp | 7955 |
Gene Length | 2040 bp |
Protein Length | 679 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637877335 |
Product | DNA gyrase subunit B |
Protein accession | YP_479129 |
Protein GI | 86738729 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.216936 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGCGTGG CGCTGCGCAG ACGCCAGGGG GCTCCCTGCG TCCGCTATGG CGGGTTGCCG GGTAGACTGG TGGATACTTC CGCCCAGAAC GAGGGGACCC GCCGCGTGGC CTACGATGCA AGTTCGATCA AGGTTCTCGA AGGTCTTGAC GCGGTCCGCA AGCGTCCGGG CATGTACATC GGCTCCACTG GAGAGCGTGG ACTGCATCAT CTCGTCTACG AGGTCGTGGA CAACGCGGTG GACGAGGCGC TCGCCGGTTA CTGCGACACC ATCACCGTGA CGCTGCTTGC CGACGGCGGG GTGCGGGTCA CCGACAACGG CCGTGGCATT CCCGTCGGCA TGCATCCCAC CGAGAAGCGG CCCGCCGTCG AGGTCGTGCT GACCACCCTG CACGCCGGCG GGAAGTTCGA CGGCAAATCG TACGCGGTGT CCGGCGGGCT GCACGGAGTC GGCGTCAGCG TGGTCAACGC GCTGTCCACC CGGCTCGACG TGGAGATCCA CCTGGATGGG CACGTCTGGT TCCAGCCGTA CGTGGCGACC CGCCCGGACA AGCCGCTGGC CAAGACCGGT ACCACCCGCA GGACCGGGAC GTCGGTCACC TTCTGGGCGG ATCCGACGAT CTTCGAGACC ACCGAGTACA AGTACGAGAC GCTCTCCCGC CGCCTGCAGG AGATGGCCTT CCTGAACAAG GGGCTGTCGA TCACGCTCGT CGACGAGCGT GACGAGGAAC GCGTGGCGGT CACCTACAAG TACGCCAACG GCCTGGTCGA CTTCGTCGGT CACCTCAACG CCACGAAGGA CACCATCCAC CGCAGCGTGA TCTCGCTGGA GTCGAAGGGC GTGGGCATCG AGGCCGAGCT CGCGATGCAG TGGAACGGCG GCTACACCGA GTCGGTCTAC ACCTTCGCGA ACACCATCAA CACCCACGAG GGCGGCACCC ACGAGGAGGG CTTCCGGGCC GCGCTGACCA GCGCCGTCAA CGCCTACGCC AAGGACCAGA ACCTGCTCAA GCCGGTGAAG GCGGGGGCCA AGAACAGCGA CGAGCGGCTC TCCGGCGACG ACATCCGGGA GGGCCTTACC GCGATCATCT CGGTGAAGCT CGCGCAGCCG CAGTTCGAGG GCCAGACCAA GACCAAGCTC GGCAACACCG AGGCCAAGAA GTTCGTCCAG GAGATGTGCT ACTCAGCGCT CAAGGACTGG TTCGAGGTCA ACCGCACCGA GGCTCGGGCC ATCGTCAGCA AGGCGCTCGA CGCCCAGCGG GCCCGCATTG CCGCCCGTCA GGCCCGCGAT CTGACCCGGC GCAAGGGTCT GCTCGGCGGC ACCGGCCTGC CGGGCAAGCT CGCCGACTGC CAGTACACCG ATCCCGAGCG GTGCGAGCTG TACATCGTCG AGGGTGACTC GGCGGGTGGG TCGGCCAAGG GTGGTCGAGA CTCGAAGTTC CAGGCGATCC TCCCGCTGCG AGGAAAGATC CTCAACGTCG AGAAGGCCCG CATCGACCGC GTTCTGAAGA ACACCGAGGT CCAGGCCCTC ATCCAGGCGC TGGGTACCGG CATCCACGAC GATTTCGACA TCGCGAAACT GCGCTACCAC AAGATCGTTC TGATGGCGGA CGCCGACGTC GACGGCCAGC ACATCCGGAC CCTGCTGCTG ACGCTGCTGT TCCGGTTCAT GCGCCCGCTG GTCGAGGCCG GTCACGTGTT TCTGGCGCAG CCGCCGCTCT ACAAGATCAA ATGGGGTAGG GAGGACTGGG AGTACGCCTA CTCCGATCGG GAGCGCGACG GGCTGGTCGC CCGCGGGGTG GAGTCCGGGC GCAAGCTGCC CAAGGATGCC ATCCAGCGCT TCAAGGGTCT CGGCGAGATG AACGCCACCG AGCTGTGGGA CACCACCATG GACCCGGACC GGCGCATCCT GCTGCAGGTC ACGCTCGACG ACGCGGCGGT CGCCGACGAG TTGTTCTCCG TGCTCATGGG TGAGGATGTC GACGCGCGTC GCAGCTTCAT CCAACGTAAT GCCAAGGACG TGCGTTTCCT GGACATCTGA
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Protein sequence | MCVALRRRQG APCVRYGGLP GRLVDTSAQN EGTRRVAYDA SSIKVLEGLD AVRKRPGMYI GSTGERGLHH LVYEVVDNAV DEALAGYCDT ITVTLLADGG VRVTDNGRGI PVGMHPTEKR PAVEVVLTTL HAGGKFDGKS YAVSGGLHGV GVSVVNALST RLDVEIHLDG HVWFQPYVAT RPDKPLAKTG TTRRTGTSVT FWADPTIFET TEYKYETLSR RLQEMAFLNK GLSITLVDER DEERVAVTYK YANGLVDFVG HLNATKDTIH RSVISLESKG VGIEAELAMQ WNGGYTESVY TFANTINTHE GGTHEEGFRA ALTSAVNAYA KDQNLLKPVK AGAKNSDERL SGDDIREGLT AIISVKLAQP QFEGQTKTKL GNTEAKKFVQ EMCYSALKDW FEVNRTEARA IVSKALDAQR ARIAARQARD LTRRKGLLGG TGLPGKLADC QYTDPERCEL YIVEGDSAGG SAKGGRDSKF QAILPLRGKI LNVEKARIDR VLKNTEVQAL IQALGTGIHD DFDIAKLRYH KIVLMADADV DGQHIRTLLL TLLFRFMRPL VEAGHVFLAQ PPLYKIKWGR EDWEYAYSDR ERDGLVARGV ESGRKLPKDA IQRFKGLGEM NATELWDTTM DPDRRILLQV TLDDAAVADE LFSVLMGEDV DARRSFIQRN AKDVRFLDI
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