| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeh_3368 |
|---|
| Symbol | |
|---|
| ID | 3889358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaeromyxobacter dehalogenans 2CP-C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007760 |
|---|
| Strand | - |
|---|
| Start bp | 3874990 |
|---|
| End bp | 3876273 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637864923 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_466572 |
|---|
| Protein GI | 86159787 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00118657 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTCA ACGAGATCCT GCAGGTCGCG CTCCGCGCCG GCGCCTCGGA CATCCACCTG
AAGGCGGGCC TCCCGCCGAT GTTCCGCGTG GACGGCTCGC TGGTGCCGCT GAAGGACGCC
CGCCGCCTGC CGCCCGAGGA GATCGCGCGG ATGGGCTTCG GGATCATGAA CGAGTACCAG
AAGGAGAAGT TCAAGCAGAC GAACGAGGTG GACCTCGCCT ACGGCGTGCC CGGCCTCGGC
CGCTTCCGCG TGAACGTCTT CCAGCAGCGC GGCACCCTCG GCGTGGTGCT CCGCGTCATC
CCGTTCCGCA TCCAGAGCAT CGAGCAGCTC ATGCTGCCGA AGATCCTGGA GAAGATCGCG
GGGGAGCAGC GCGGCCTGGT CCTCGTCACC GGCACCACCG GCTCCGGCAA GTCCACCACG
CTCGCGGCGA TGATCGACCA CATCAACGCG ACCGAGACCT GCCACATCAT GACCATCGAG
GATCCCATCG AGTTCCTCAT CCGCGACAAG CGCTCGATCG TGAACCAGCG CGAGGTCGGG
GTGGACACGA TGAGCTTCGG GCAGGCGCTG AAGAGCGCGC TCCGGCAGGA CCCGGACGTC
ATCCTGGTGG GCGAGATGCG CGACCTCGAG ACGATCGAGA CCGCGCTCAC CGCGGCCGAG
ACCGGCCACC TGGTGATGTC CACCCTGCAC ACCCTCGACG CCACCGAGAC CGTCAACCGC
ATCATCTCGG CGTTCCCGCC CTACCAGCAG AAGCAGGTGC GCCTGCAGCT CGGCTCGGTG
CTGAAGGCCG TGATCTCGCA GCGCCTGGTG CCGCGCGCCG ACGGGAAAGG GCGCGTGCCG
GCCATCGAGG TGCTGCTCGC GACGGCGCGC GTCCGCGAGC TCATCGAGGA CAAGGACCGG
ACGAAGGAGA TCTCCGACGC GATCTCGCAG GGCCACACCA CCTACGGGAT GCAGACGTTC
GACCAGTCGC TGATGGCGCT GCTCCGCTCG AGCCTCATCA CCTACGAGGA GGCGCTGCGC
CAGGCCACCA ACCCGGACGA CTTCGCGCTG CGCGTCTCCG GCGTGAGCGG CACCTCCGAC
TCGAAGTGGG ACTCGTTCGA GAAGCCCGCC GAGCCCGGCG CCGCCGCCCG CGCCGCCGCC
CCCAGCCAGC CCGCCGCGCC GCGCCCCGCG CCCGGCGCGC CGCTCGGCCG GCTCGCGCCC
GGGGCCGCGC CCCGGCCCGC CGCCGCGCCC CGCGCCGCCG GCCAGGGCGG GCCGGACGAC
GACTTCCAGA TCGAGCGCTT CTAG
|
|---|
| Protein sequence | MELNEILQVA LRAGASDIHL KAGLPPMFRV DGSLVPLKDA RRLPPEEIAR MGFGIMNEYQ
KEKFKQTNEV DLAYGVPGLG RFRVNVFQQR GTLGVVLRVI PFRIQSIEQL MLPKILEKIA
GEQRGLVLVT GTTGSGKSTT LAAMIDHINA TETCHIMTIE DPIEFLIRDK RSIVNQREVG
VDTMSFGQAL KSALRQDPDV ILVGEMRDLE TIETALTAAE TGHLVMSTLH TLDATETVNR
IISAFPPYQQ KQVRLQLGSV LKAVISQRLV PRADGKGRVP AIEVLLATAR VRELIEDKDR
TKEISDAISQ GHTTYGMQTF DQSLMALLRS SLITYEEALR QATNPDDFAL RVSGVSGTSD
SKWDSFEKPA EPGAAARAAA PSQPAAPRPA PGAPLGRLAP GAAPRPAAAP RAAGQGGPDD
DFQIERF
|
|---|
| |