| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeh_1593 |
|---|
| Symbol | |
|---|
| ID | 3887842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaeromyxobacter dehalogenans 2CP-C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007760 |
|---|
| Strand | + |
|---|
| Start bp | 1824115 |
|---|
| End bp | 1828299 |
|---|
| Gene Length | 4185 bp |
|---|
| Protein Length | 1394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637863129 |
|---|
| Product | DNA-directed RNA polymerase, subunit beta-prime |
|---|
| Protein accession | YP_464803 |
|---|
| Protein GI | 86158018 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGGACA TCTTCAATTT CTTCGAGAAG CCGAAGGACC CGCTCTCGTT CTCGGCCATC
CGGATCTCGC TCGCGAGCCC GGACAAGATC CGGCAGTGGT CGCACGGCGA GGTGAAGAAG
CCGGAGACCA TCAACTACCG GACGTTCAAG CCGGAGCGGG ACGGCCTCTT CTGCGCGAAG
ATCTTCGGCC CGGTGAAGGA CTACGAGTGC AACTGCGGCA AGTACAAGCG CATGAAGCAC
CGGGGCGTGG TCTGCGAGAA GTGCGGCGTC GAGGTGATCC AGTCCAAGGT GCGCCGTGAG
CGGCTCGGCC ACATCACGCT GGCCACGCCG GTCGCGCACA TCTGGTTCCT GAAGTCGCTG
CCCAGCCGCA TCGGCAACCT GCTCGACATC ACGCTGAAGG ACCTGGAGAA GGTTCTTTAC
TGCGAGTCGT ACATCGTCAT CGACCCGAAG GAGACCACCT TCCAGCGGGG CGAGCTCCTC
TCCGAGGACC GCTACCAGAA GGCGCTCGAC GAGTTCGGCG ACGACGCGTT CTCCGCCGGC
ATGGGCGGCG AGGCGGTGCT CGGCCTGCTC CGCGGCGTCG GCCCGGCCAG CAAGGAGCAC
GGCGAGGGCA TCCCCGGCCT CGCCAACGAG CTGCGCGCCG AGATGAAGGA GGCCACCAGC
GACGCGAAGC GGAAGAAGAT CGCCAAGCGC CTGAAGGTGG TGGAGGCGTT CGTCGCCTCC
GGCAACAAGC CGGAGTGGAT GATGCTGGAG GTCATCCCGG TGATCCCGCC GGACCTCCGC
CCGCTCGTCC CGCTCGACGG CGGCCGCTTC GCGACCTCCG ACCTGAACGA CCTCTACCGG
CGCGTCATCA ACCGCAACAA CCGCCTGAAG CGGCTCCAGG AGCTGAACGC CCCCGACATC
ATCATCCGCA ACGAGAAGCG GATGCTGCAG GAGGCGGTGG ACGCGCTGTT CGACAACGGC
CGGCGCGGCA AGACCATCAC CGGCCCGAAC AAGCGGCCGC TGAAGTCGCT CTCCGACATG
CTGAAGGGCA AGCAGGGCCG GTTCCGCCAG AACCTGCTCG GCAAGCGCGT GGACTACTCC
GGCCGCTCGG TGATCGTGGT CGGCCCGGAG CTCAAGCTCC ACCAGTGCGG CCTGCCCAAG
ATCATGGCGC TCGAGCTGTT CAAGCCGTTC ATCTACAACA AGCTCGAGGA GAAGGGGTAC
GTCACCACCA TCAAGAGCGC GAAGAAGATG GTGGAGAAGG AGCGCCCCGA GGTCTGGGAC
ATCCTCGACG AGGTGATCCG CGAGCACCCG GTGCTCCTCA ACCGCGCCCC CACGCTCCAC
CGCCTCGGCA TCCAGGCGTT CGAGCCGGTG CTGATCGAGG GCAAGGCCAT CCAGCTCCAC
CCGCTGGTCT GCACCGCCTT CAACGCCGAC TTCGACGGCG ACCAGATGGC CGTGCACGTG
CCGCTCTCCA TCGAGGCGCA GATGGAGGCC CGCGTGCTCA TGATGAGCAC GAACAACATC
CTGTCCCCGG CGCACGGCAA GCCGATCATC GTGCCGTCGC AGGACATCGT GCTCGGCATC
TACTACATGA CCCGCGAGCG CGCGTTCGCG CGCGGCGAGG GCAAGGTGTT CGCGAGCCCG
GAGGAGGTCC GCGCCGCGTA CGACCAGGGC GAGGTGGACC TGCAGGCGAA GGTCTGGGTC
CGCATGGACG GCAAGCGGGT CGAGACGACC GTCGGCCGCG TGCTGCTCTA CGACATCGTC
CCGCGCCGGC TGTCCTTCGA CGCCATCAAC AAGGTGATGG ACAAGAAGCA GCTGCAGGGC
CTCATCGACC TGACCTACCG CCTGTGCGGC GAGAAGGAGA CCGTCCTCCT CGCCGACCGC
GTCCGCTCGA TGGGCTACGG GAACGCCACC CGGGCCGGCA TCTCGATCGC GCTCGACAAC
ATGGTGATCC CGCGGAAGAA GGTGGACCTG CTCGAGCGCG CCACGCGCGA GGTGGACGAC
ATCCAGGCCC AGTACACCGA GGGCCTCATC ACCATCGGCG AGCGGTACAA CAAGGTCATC
GACATCTGGG CCCAGGTCAC CGAGGAGGTG GCGCAGGAGA TGATGGGCGA GATCGGGACC
GAGACCGCGG TGGGGACGGG CAAGGACGGC AAGCGCGAGG AGCGCCGGCA GCCGTCGTTC
AACCCGATCT ACATCATGGC CGACTCGGGC GCCCGCGGCT CCGCGCAGCA GATCCGGCAG
CTCGCCGGCA TGCGCGGCCT GATGGCCAAG CCGTCGGGCG AGATCATCGA GACCCCGATC
ACGGCGAACT TCCGCGAGGG CCTCAACGTC CTCCAGTACT TCATCTCGAC GCACGGCGCC
CGCAAGGGCC TCGCCGACAC GGCGCTCAAG ACCGCGAACT CCGGCTACCT GACCCGCCGC
CTGGTGGACG TGGCCCAGGA CGCGATCATC ACCGAGTACG ACTGCGGCGC GATGGACGGC
ATCACGCTCG GCGCGCTGGT CGAGGGCGGC GAGATCATCG AGCCGATGGG CGAGCGCATC
CTCGGCCGCG TCGCGCTCGA CGACATCCTC GACGCGTTCT CCGGCAACGT GCTGGTGAAG
GCCAACGAGG AGATCGACGA GGGCAGGGTC AAGCTCATCG AGAACTCGGG CATCGACAAG
GTGAAGATCC GCTCGGTGCT CACCTGCCAG GCGCGGCGCG GCATCTGCGT CGAGTGCTAC
GGGCGCGACC TCGCCCGCGG GCGCAAGGTG AACATCGGCG AGGCGGTCGG CGTCATCGCC
GCCCAGTCGA TCGGCGAGCC GGGCACCCAG CTGACGATGC GGACGTTCCA CATCGGCGGC
GCGGCGTCGC GGCGGGCCGA GCAGTCCACC ATCGAGAACC GCAACGCCGG CCTGATCAAG
TTCAACAACG TGAGCGTGGC CAAGAAGCAC GACGGCACGC TCATCGTGAT GAACCGGAAC
GGCGAGATCA TCGTCACCGA CGACCAGGGC CGCGAGCGCG AGCGCTACGG CGTGGTGTAC
GGCGCCAAGC TGCTGGTCCG CGAGGGCCAG AAGGTCGAGG CGAACCAGCT GCTGGCCGAG
TGGGATCCCT ACTCGATGCC GATCATCACC GAGGTGGCCG GCCGCGTGAA GTACGGCGAC
CTCGTGGACG GCGTCACCAT CAGCGAGCAG GTGGACGAGA TCACCGGCCT GGCCCGCAAG
GCGGTCATCG CCTCCAAGGA CCCGGACGCC CGGCCGCGCA TCTCGATCAA GGACGAGGAG
GGCAAGACCA AGAAGCTCGC CAACTCCGAC GCCGACGCCC GCTACATGCT GCCGGAGGGC
GCGAACCTGG TGGTGAACGA CGGCGACGAG GTGGACGCCG GCGACGTCAT CGCCAAGATG
CCCCGCGAGA CCACCAAGAC CAAGGACATC ACCGGCGGTC TCCCGCGCGT CGCCGAGCTC
TTCGAGGCCC GCAAGCCCAA GGAGCACGCG GTCATCTCCG AGATCGACGG CGTGGTGGCG
TTCGGCAAGG ACACCAAGGG CAAGCGCAAG GTGGTCATCA CGCCCGAGGT GGACGGCAAG
CTCCGGCCCG ATCTCGCGAA GGAGTACCTG ATCGGCAAGG GCAAGCACAT CTCCGTCCAC
ACCGGCGACC GCGTCCGCGC GGGCGAGGCG CTCATGGACG GCGCCGCGAA CCCGCACGAC
ATCCTGCGGG TGCTCGGTGA GAAGGAGCTC GCGCGCTGGC TGGTGGACGA GGTGCAGGAG
GTCTACCGGC TCCAGGGCGT GAAGATCAAC GACAAGCACA TCGAGACGAT CGTGCGGCAG
ATGCTGCGCC GCGTGCGGAT CGTGGACGTG GGCGACACCG AGTTCCTGGC GGACGAGCAG
GTCGAGAAGT TCGCGTTCGA GGAGGAGAAC GAGCGCGTGC TGAAGGCCGG CGGCCGCGCC
GCCCAGGGTG AGCCGCTGCT GCTCGGCATC ACCAAGGCGT CGCTCTCGAC CGAGTCCTTC
ATCTCGGCCT CGTCGTTCCA GGAGACCACG AAGGTGCTGA CCGAGGCCGC CATCAGCGGC
AAGGTGGACT ACCTGCGCGG CCTGAAGGAG AACGTCATCA TGGGCCGCCT GGTGCCGGCC
GGCACCGGCC TCGGGGCCTA CAAGCACCTC GACATCGAGG TGGAGACCCC GGTGGACGCG
GTCGAGGAGG CGGAGGAGGC CCTGGCCGTC GGGGCGGAGG AGTAG
|
|---|
| Protein sequence | MKDIFNFFEK PKDPLSFSAI RISLASPDKI RQWSHGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC NCGKYKRMKH RGVVCEKCGV EVIQSKVRRE RLGHITLATP VAHIWFLKSL
PSRIGNLLDI TLKDLEKVLY CESYIVIDPK ETTFQRGELL SEDRYQKALD EFGDDAFSAG
MGGEAVLGLL RGVGPASKEH GEGIPGLANE LRAEMKEATS DAKRKKIAKR LKVVEAFVAS
GNKPEWMMLE VIPVIPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLQELNAPDI
IIRNEKRMLQ EAVDALFDNG RRGKTITGPN KRPLKSLSDM LKGKQGRFRQ NLLGKRVDYS
GRSVIVVGPE LKLHQCGLPK IMALELFKPF IYNKLEEKGY VTTIKSAKKM VEKERPEVWD
ILDEVIREHP VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCTAFNAD FDGDQMAVHV
PLSIEAQMEA RVLMMSTNNI LSPAHGKPII VPSQDIVLGI YYMTRERAFA RGEGKVFASP
EEVRAAYDQG EVDLQAKVWV RMDGKRVETT VGRVLLYDIV PRRLSFDAIN KVMDKKQLQG
LIDLTYRLCG EKETVLLADR VRSMGYGNAT RAGISIALDN MVIPRKKVDL LERATREVDD
IQAQYTEGLI TIGERYNKVI DIWAQVTEEV AQEMMGEIGT ETAVGTGKDG KREERRQPSF
NPIYIMADSG ARGSAQQIRQ LAGMRGLMAK PSGEIIETPI TANFREGLNV LQYFISTHGA
RKGLADTALK TANSGYLTRR LVDVAQDAII TEYDCGAMDG ITLGALVEGG EIIEPMGERI
LGRVALDDIL DAFSGNVLVK ANEEIDEGRV KLIENSGIDK VKIRSVLTCQ ARRGICVECY
GRDLARGRKV NIGEAVGVIA AQSIGEPGTQ LTMRTFHIGG AASRRAEQST IENRNAGLIK
FNNVSVAKKH DGTLIVMNRN GEIIVTDDQG RERERYGVVY GAKLLVREGQ KVEANQLLAE
WDPYSMPIIT EVAGRVKYGD LVDGVTISEQ VDEITGLARK AVIASKDPDA RPRISIKDEE
GKTKKLANSD ADARYMLPEG ANLVVNDGDE VDAGDVIAKM PRETTKTKDI TGGLPRVAEL
FEARKPKEHA VISEIDGVVA FGKDTKGKRK VVITPEVDGK LRPDLAKEYL IGKGKHISVH
TGDRVRAGEA LMDGAANPHD ILRVLGEKEL ARWLVDEVQE VYRLQGVKIN DKHIETIVRQ
MLRRVRIVDV GDTEFLADEQ VEKFAFEEEN ERVLKAGGRA AQGEPLLLGI TKASLSTESF
ISASSFQETT KVLTEAAISG KVDYLRGLKE NVIMGRLVPA GTGLGAYKHL DIEVETPVDA
VEEAEEALAV GAEE
|
|---|
| |