| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_I2954 |
|---|
| Symbol | |
|---|
| ID | 3849905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007651 |
|---|
| Strand | + |
|---|
| Start bp | 3396298 |
|---|
| End bp | 3400203 |
|---|
| Gene Length | 3906 bp |
|---|
| Protein Length | 1301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637842622 |
|---|
| Product | ImcF-like family protein |
|---|
| Protein accession | YP_443461 |
|---|
| Protein GI | 83721202 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.858657 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACGCT TCCTCAACGT GTTGACTCAC CCTCGCACGC TCACGATCGT CGGCTTCGCC
GCGCTCGCGG CGGTTCTGTT CATCGCGGCC GATGCGCTAC AGATCGGCTT CGTATGGGCG
GCCGGCGCGC TCGCCGTCGC GCTCGCGCTC TGGCTCGCGA CGAAGCTCTG GCGCCGCTCG
CGCGTGCGCC GCGCGAATCG CCAGCTCGGC GACATGCTCG AGCAGCAGGC CGAAACGGGC
AAGGTGTCCG CCGCCGTGGC CGAGCCCGCC AAGCGGGCGG ACCTCGACGT GCTGCGCACC
CGCCTTGCCG ACTCCGTGAA GACGATCAAG ACCTCGAAGA TCGGCCAGGT GTCGGGCGGC
TCCGCGCTGT ACGAACTGCC GTGGTACATC GTGATCGGCA ACCCGGCCGC GGGCAAGAGC
AGCGCCGTCA TCAACTCGGG GCTGCAGTTT CCGTTCGCGG ACAAGAACAG CGCGGTGATC
CACGGCATCG GCGGCACGCG CAACTGCGAC TGGTTCTTCA CGACGGAAGG CATCCTGCTC
GACACCGCGG GCCGTTATTC GGTGCACGAG GAAGACCGCA GCGAATGGCT CGGCTTCCTC
GATCTGCTCA AGCGCTATCG TCCGAAGGCG CCGATCAACG GGATCATCGT GACGGCGAGC
ATCGCCGAGC TGACGGGCAA CCGTCCCGAA TTCGCGATCA ACCTCGCGAA GAACCTGCGC
CAGCGCGTGC AGGAGCTCAC CGAGAAGCTC GAAGTGTTCG CGCCCGTCTA CGTGATGTTC
ACGAAGGCCG ACCTGATCAC GGGCTTCACC GAGTTCTTCA GCAGCAGCGA CCGCCAGGAA
TACGACCGCG TGTGGGGCGC GACGCTGCCG TACGAGCCGG ACGAGAAGCG CGATGTCGTC
GCGCTGTTCG ATCAGCGCTT CGAAGAGCTG TATGACGGGC TGAAGGAGAT CAGCGTCGCG
CAACTGTCGA TCAGCCGCGG CAACAAGCTT TCGCCCGGCC AACTGAGCTT CCCGCTCGAA
TTCTCGACGA TCAAGCCCGC GCTGCGCTCG TTCCTCGCGA CGCTGTTCGA GGACAACCCG
TTCCAGTACA AGCCGATCTT CCGCGGCTTC TATTTCACCA GCGCGTTGCA GGAAGGCGAA
ACGAACAGCG CGGCCGCGCA GCGGATCGCG AACCGCTTCG GCCTTGATTC GCAAAGCCTG
CCGAAGCCGC ACAGCGCATT CTCGAAGAAC GGCTTCTTCC TGCGCGACCT GTTCTCGAAG
GTGATCTTCG CGGACCGCCA GACAGTCCGC CAGTTCGCGA GCCCGACGAA GACGCGCGTG
CGCTACGCGA CGTTCTTCGG CTTCGTCGCG GCGCTCGCGC TCGCGCTCGG CGGCTGGACG
TGGTCGACGA TCGGCAACCA GCAGCTCGTC TCGAACGTGC AAGCCGACCT CGACAACGTG
ACCCGCCTGC AGCAGAACCG CAACGACCTG CAGTCGCGCC TGCAGGCGAT GGACATCCTC
GAGGACCGGA TCGAGCAGCT CGAGCAGTTC CGCCGCGACA AGCCGCTGTC CGTGTCGCTC
GGCCTGTATC AGGGCAACCG GCTCGAGCAG CATCTGCTGA CCGAGTACTA CAACGGCGTG
CGGCAGATCC TGCTCGCCCC CGTGTCGGAC AACCTCGCCT CGTTCCTGAA GGACGTGAAC
GCGCACCCGG ACCAGCTCGC GCCGATGACG CGCGCCCCGG AATCGGGCGC GACGCCCGCA
GGCCCGATGC CGGTGTCGGC GAATCCCGCA GCTGCGCCGG GTACCGCCCC CTCCCCTGCC
GTCGCGCCGA ACCAGCAACA GGGCGGCCTG TATAACGACG CGTCGCCGAC CAACGTCGAG
GACGCGTACA ACGCGCTGAA GACCTACCTG ATGCTGTCCG ACAAGCGGCA CGTCGAGCAG
GCGCACCTGA CCGATCAGGT CGCGCGCTTC TGGCGCGGCT GGCTCGAGAC GAATCGCGGC
AACATGCCAC GCGACGAGAT GATCAAGAGC GCGGAGCGGA TGATCACGTT CTACCTGTCG
CGCGTGTCCG ACAACGATTG GCCGATGATC GAGGCGAATC TCGCGCTCGT CGATCAGACC
CGCGAGAACC TGCGCCGCGT CGTGCGCGGG ATGCCGGCCC GCCAGCGCGT GTACGAGGAG
ATCAAGGCGC GCGCGTCGAC CCGCTTCGCG CCGATGACGA TCGCGCGCAT CGTCGGCGAA
GGCAACACGG GCCTCGTCGC GGGCAGCTAT GCGATCCCCG GCACGTTCAC GCGCGAGGCG
TGGTTCCAGT ACGTGCAGCC GGCGATCCGC GACGCCGCGA CCAAGGAGCT GCAGGCGAAG
GACTGGGTGC TGAACACCGC GTCGGCCGAC GATCTGACGC TCGAGGGCAG CCCCGAGCAG
ATCCAGAAGA CGCTCGTCGC GATGTACAAG ACCGAGTACG CGCAGCACTG GCAGAAGTTC
ATGCAGGGCA TCGCGGTGCA GGGCTTCGGC AACTTCACGC AGGCCGTCGA TGCGATGAAC
AAGCTCGGCG ACCCGCAGGA TTCGCCGATC CGCAAGGTGC TCGAGACCGC GTACGACCAG
ACCTCGTGGG ACAACCCGTC GCTCGCGAAC GCGACGATCA GGAAGGCGCA GACGGGCGTC
GTGAACTGGG TCAAGCAGTG GTTCACGCGC CAGCCGGGCG GCCAGATCGC GGCGAACGTC
GACATCAACG GCAATCCCGC CGACGTGCCG ATGGGCCCGA TCGGCCAGGA GTTCGTCGGG
CTCGGCCGGA TCGTCGCGAC GCACGACGGC ACGTCGATGC TCAAGGGCTA CATGGACACG
CTGTCGAAGG TCCGCACGCG CTTTAACGTG ATCAAGAACC AGGGCGACCC CGGCCCCGGC
GCGCGCCAGC TGATGCAGCA GACGCTCGAC GGCAACGGCT CGGAGCTCGC CGATTCGCTG
AAGTTCGTCG ACGAGCAGAT GCTCACGGGC CTGACCGATT CGCAACGCAA GTCGCTGCGC
CCGCTCCTCG TGCGTCCGCT GATGCAGGCG TTCGCGGTCG TGATCCAGCC GGCGAGCGTC
GAGGTGAACA AGGTGTGGAA CGCGCAGGTG TACCAGCCGT TCCAGAACTC GCTCGCGAAC
AAGTATCCGT TCGCGGCGGG CGCGAAGGTC GAAGCGGGCG CGGGCGAGAT CGCGCAGGTG
TTCGGCCCCG ACGGCTCGAT CGCGAAGTTC GTCGGCGCGA CGCTCGGGCC GCTCGCAGTG
CGCCGCGGCG ACACGCTGTC CGCGCGCACC TGGGGCGACA TGGGCCTCGC GCTCACGCCG
GATTTCACGA GCGGCTTCGC GCGCTGGGTC GCGCCGCTCG CGGGCGGCGC GGCGACGAGC
GCCGCCGGGT CGTCCGAACC GCAGACCGTG TTCCAGGTGC TGCCGCAGCC GAGCAGCGGC
ACGACCGAGT ACACGATCGC GATCGACGGC CAGCAACTGC GTTACCGCAA CACGCCGCCG
CAATGGACGA ACTTCGTGTG GCCGAACCCG CAGGGCTCGC CCGGCGCGAC GCTGTCCGCC
ACGACGTTCG ACGGCCGTAC GGTGCAGCTC GTCAACGAGC CGGGCCGCTA CGGTCTCGAG
AAGCTGATCA ACTCGGCGCA GCGCAAGCGC CGTGCGGACG GCACGTTCGA TCTGACGTGG
ACGCAAGGCA GCGTCAGCGT GTCGGTGACG ATGCGCATCA TCAGCACGTC GCAGCCGACT
GGCGGCGGCG GCGATCAGCC GCAGCAGCAG AGCCTGCGCG GCCTGCGCCT GCCGTCGTCG
GTCGCCGACG CGAGCGCGGG CGGCGCGGCC AACGCAACGG CGCAGCCCGG CTCGGGCGGC
ACGGCCGCGG CCCCGCAGGC CGCCGTCGCG ACGGCTTCCG CATCGAATGC ACAGGGGGCG
CAATGA
|
|---|
| Protein sequence | MQRFLNVLTH PRTLTIVGFA ALAAVLFIAA DALQIGFVWA AGALAVALAL WLATKLWRRS
RVRRANRQLG DMLEQQAETG KVSAAVAEPA KRADLDVLRT RLADSVKTIK TSKIGQVSGG
SALYELPWYI VIGNPAAGKS SAVINSGLQF PFADKNSAVI HGIGGTRNCD WFFTTEGILL
DTAGRYSVHE EDRSEWLGFL DLLKRYRPKA PINGIIVTAS IAELTGNRPE FAINLAKNLR
QRVQELTEKL EVFAPVYVMF TKADLITGFT EFFSSSDRQE YDRVWGATLP YEPDEKRDVV
ALFDQRFEEL YDGLKEISVA QLSISRGNKL SPGQLSFPLE FSTIKPALRS FLATLFEDNP
FQYKPIFRGF YFTSALQEGE TNSAAAQRIA NRFGLDSQSL PKPHSAFSKN GFFLRDLFSK
VIFADRQTVR QFASPTKTRV RYATFFGFVA ALALALGGWT WSTIGNQQLV SNVQADLDNV
TRLQQNRNDL QSRLQAMDIL EDRIEQLEQF RRDKPLSVSL GLYQGNRLEQ HLLTEYYNGV
RQILLAPVSD NLASFLKDVN AHPDQLAPMT RAPESGATPA GPMPVSANPA AAPGTAPSPA
VAPNQQQGGL YNDASPTNVE DAYNALKTYL MLSDKRHVEQ AHLTDQVARF WRGWLETNRG
NMPRDEMIKS AERMITFYLS RVSDNDWPMI EANLALVDQT RENLRRVVRG MPARQRVYEE
IKARASTRFA PMTIARIVGE GNTGLVAGSY AIPGTFTREA WFQYVQPAIR DAATKELQAK
DWVLNTASAD DLTLEGSPEQ IQKTLVAMYK TEYAQHWQKF MQGIAVQGFG NFTQAVDAMN
KLGDPQDSPI RKVLETAYDQ TSWDNPSLAN ATIRKAQTGV VNWVKQWFTR QPGGQIAANV
DINGNPADVP MGPIGQEFVG LGRIVATHDG TSMLKGYMDT LSKVRTRFNV IKNQGDPGPG
ARQLMQQTLD GNGSELADSL KFVDEQMLTG LTDSQRKSLR PLLVRPLMQA FAVVIQPASV
EVNKVWNAQV YQPFQNSLAN KYPFAAGAKV EAGAGEIAQV FGPDGSIAKF VGATLGPLAV
RRGDTLSART WGDMGLALTP DFTSGFARWV APLAGGAATS AAGSSEPQTV FQVLPQPSSG
TTEYTIAIDG QQLRYRNTPP QWTNFVWPNP QGSPGATLSA TTFDGRTVQL VNEPGRYGLE
KLINSAQRKR RADGTFDLTW TQGSVSVSVT MRIISTSQPT GGGGDQPQQQ SLRGLRLPSS
VADASAGGAA NATAQPGSGG TAAAPQAAVA TASASNAQGA Q
|
|---|
| |