| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_I2540 |
|---|
| Symbol | |
|---|
| ID | 3848022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007651 |
|---|
| Strand | - |
|---|
| Start bp | 2897507 |
|---|
| End bp | 2898847 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637842209 |
|---|
| Product | type II/IV secretion system protein |
|---|
| Protein accession | YP_443057 |
|---|
| Protein GI | 83720268 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.511754 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACACG ACATTCAATT TGCCGACGGG GCGACGCCGT TCTCGCAAAC GCAGCAGTTT
CACGACATCA AGAACGCCGC GCACGAGCAT CTGCTGACGC GCATCGAGGA GCTGGGCGCG
GAGTTCGGGC GCTGGTCGCG GCAGGCGATC AACCAGTTCG TCGATCTCGA GATCGACAGC
TTTGTGCGGT TGCGCCGCAT TCCGCTCAAC GAGAACGAGG TGCGCGCGGT CGCGCAGGCG
CTGACCAAGG AGCTCGCGGG TTTCGGGCCG ATCGAGGACC TGCTCGCCGA TCCGAACGTC
GAGGACATCC TGATCAACGG CTACAGCGAC GTCTACGTGT CGAAGCACGG AATCCTGACG
AAGCTGCCCG TGCGCTTCAC CGACAACGCG CACCTGCTGC GCATCGTGCG GCGCATTCTC
GCGCCGATCG GCCGCCGGCT CGACGAGTCG AATCCGATGG TCGACGCGCG GCTGCCGGAC
GGCGGGCGCG TGAACGTCGT GATCGAGCCG CTGTCGATCG ACGGCCCGGT CGTGTCGATC
CGCAAGTTCC GCAAGGACCC GCTGAAGCCG GCCGATCTGC TCGCGAACGG CACGTTCAAC
GAAGAGATCG GCGCGCTGCT CGAAGCCGCG GTCGCCGCGC GCTGCAACAT CCTCGTGTCG
GGCGGCACGA GCTCCGGCAA GACATCGCTC CTGAACGCGC TCGCGTTCCA CATTCCCGAA
GCCGAGCGCG TCGTGACGAT CGAGGACACG GCGGAGCTGT CGCTCAACCA CCCGCATGTG
GTGCGGCTCG AGAGCCGGCC GGGCGGCTTC GACGGCACGG GCGTCGTGTC GATCCGCGAC
CTGCTGCGCA ACACGCTGCG GATGCGCCCG GACCGGATCA TCGTCGGCGA AGTGCGCGGC
GGCGAGGTGC TCGAGATGAT GCAGGCGATG AATACCGGCC ACGATGGCTC GATGGGCACG
ATCCACGCGA GCTCGCCGCG CGAGTGCCTG TACCGCCTCG AGATGCTCGC CGGCTTCGCG
GGCTTTCAGG GCACCGAATC GAGCCTGCGC CGGCAGATCT CGAACGCGGT CGACTTCATC
GTCCAGATCG GGCGGCTGTC GAACGGGCGG CGGCGTATCC TGTCGGTCAC CGAGGTGACC
GGGCTGTCCG ACAACATCAT CGCGACGCAG GAGCTCTATC GCTACGAGCC GCGCGTGAAC
GCGGACGGCG ATGAGATCGA CGCGTGGGAA TCGCTCGGCA TCCATCCGCA TTCGCCGAAG
CTCGCGCGCT TCAGGCAGGC GCTGTCGGGC GGCGGCTTCG GCGGCGAGCC TTACGGCCGC
GGCGGGGGCT TCAATGTCTA G
|
|---|
| Protein sequence | MAHDIQFADG ATPFSQTQQF HDIKNAAHEH LLTRIEELGA EFGRWSRQAI NQFVDLEIDS
FVRLRRIPLN ENEVRAVAQA LTKELAGFGP IEDLLADPNV EDILINGYSD VYVSKHGILT
KLPVRFTDNA HLLRIVRRIL APIGRRLDES NPMVDARLPD GGRVNVVIEP LSIDGPVVSI
RKFRKDPLKP ADLLANGTFN EEIGALLEAA VAARCNILVS GGTSSGKTSL LNALAFHIPE
AERVVTIEDT AELSLNHPHV VRLESRPGGF DGTGVVSIRD LLRNTLRMRP DRIIVGEVRG
GEVLEMMQAM NTGHDGSMGT IHASSPRECL YRLEMLAGFA GFQGTESSLR RQISNAVDFI
VQIGRLSNGR RRILSVTEVT GLSDNIIATQ ELYRYEPRVN ADGDEIDAWE SLGIHPHSPK
LARFRQALSG GGFGGEPYGR GGGFNV
|
|---|
| |