| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_I2287 |
|---|
| Symbol | |
|---|
| ID | 3848298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007651 |
|---|
| Strand | - |
|---|
| Start bp | 2575130 |
|---|
| End bp | 2576737 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 637841956 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_442808 |
|---|
| Protein GI | 83721659 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.469139 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTTT CGATCCCCCT GCTGCCGCCA CGGCTGATTG CCCTGTTGCC GATCGCCGCG
CGCGTCGCAC CGCGCGCGAG CGCCACCGCC GCCGCGCTCG CGCTGGCGGG CGCGACGGCC
GGCTGCTCGC TGTTCGCGCC GAGCGACGCG CCGCCCGTGA TGCCGTCGCC CGCGCATTAC
GGCGCGACGC CGCTGCCCGA GCGCACGGCC GCCGCGCAAG GGCTCGCGCA GCGCTTCGAC
GTCGGCGCGC AGCCGGTGCC CGACTGGTGG AAGCGCTACC GGTCGCCCGC GCTCGACGCG
CTCGTCGACG AAGGCTTGCG CAACAGCCCG ACGCTCGCCG CCGCCGAAAA GAACCTGACC
GCCGCGCGCG AGCAGTTGCG CGCGCAGATC GGCAGCTCGC TGCTGCCGTC GATCGACGCG
GGCGGCCAGG CGACGCGCGA GCGCGCGCTC GGCGTGCCGG CGTTCGGCCC GCAGACGGTG
CTCTACAACG TGTTCGCGGG CCAGTTGCAG GCGAGCTACA CGCTCGACCT GTTCGGCGCC
GCGCGCTTCG CGAACCGCGC GCTCTCGAAG CGCGTCGACA TGAACGCGTA CCAGCTCGAA
TCCGCGCGGC GCGCGCTCGC GGCGAACATC GTGACGGCCG CCCTCACGTC GGCCGCGCTC
GCCGAGCGGG TCGCGACGAC CGAGCGGCTG GTCGCGCTCG CGCGCGAGCA GGCGAACGAC
GCGGCGGCGC GCCATCGGCT CGGCGCGGCG TCGCGCACCG ACATGCTGAA CGCGCAGCAA
AGCGCGGCGG CGCTCGAGGC CAGCCTGCCC GCGCTGCGCC AGCAATGGCA GACCACGCGC
CACGCGCTCG CCGTGCTGCT CGGCCGCACG CCCGATGCGG CGCCCGCCGA TCTCGCGCTC
GCCGACGTGC AACTGCCGCA GGACGTGCCC GTCGTCGTGC CGTCCACGCT GCTGCAGGCG
CGGCCCGACA TTCGCGCGGC CGAAGCCGGC TTGCAGGCGG CCGCGTCCGA AGTCGGCGTC
GCGACCGCGC AGATGTTCCC GCAGTTGTCG CTGTCGGCGT CGATGGGTCA CGCGGGCTTC
AACTGGCCCG CGATGCTGTC GGGCGCGGGC GCGATCTGGA GCGTCGGCGC ATCGCTCACG
CAGCCGCTCT TCCACGGCGG CGCGCTGCTC GCGCAACGCC GCGCGGCGCG CGCGACCTAC
GACGCGGCCG TCGACCAGTA CAGGCAGACG GTGCTCGCCG CGTTCCAGGA CGTCGCCGAC
AAGCTCGCCG CGCTCGATAA CGACGCGAGC GCGCTCGACG CGTCGAACCG CTCGGCCGTC
GCCGCGCGCG GCGCGTTCGA CGACACCGCG GCGCGCGTGC GGCTCGGCGC GCTGCCGCCG
TCGGCCGCGC GCGCGAGCGA GCAGCAGTAC CGCAACGCGC GGCTCGACGA GATCCGCGCG
ACGGGCGCGC GGCTCGTCGA TACGGCGCGG CTGTTTCAGG CGATGGGTAC GCCGACCGAC
GACGACGCGC ACGCGAAGGA CGCGTCGCGC GCGCGCGACG CAAACCCGCT CGGCAAGGGC
GACGCGATCG GCGCGACGCA GGGCCGGATC GAAGCCCGGA GCCACTGA
|
|---|
| Protein sequence | MRVSIPLLPP RLIALLPIAA RVAPRASATA AALALAGATA GCSLFAPSDA PPVMPSPAHY
GATPLPERTA AAQGLAQRFD VGAQPVPDWW KRYRSPALDA LVDEGLRNSP TLAAAEKNLT
AAREQLRAQI GSSLLPSIDA GGQATRERAL GVPAFGPQTV LYNVFAGQLQ ASYTLDLFGA
ARFANRALSK RVDMNAYQLE SARRALAANI VTAALTSAAL AERVATTERL VALAREQAND
AAARHRLGAA SRTDMLNAQQ SAAALEASLP ALRQQWQTTR HALAVLLGRT PDAAPADLAL
ADVQLPQDVP VVVPSTLLQA RPDIRAAEAG LQAAASEVGV ATAQMFPQLS LSASMGHAGF
NWPAMLSGAG AIWSVGASLT QPLFHGGALL AQRRAARATY DAAVDQYRQT VLAAFQDVAD
KLAALDNDAS ALDASNRSAV AARGAFDDTA ARVRLGALPP SAARASEQQY RNARLDEIRA
TGARLVDTAR LFQAMGTPTD DDAHAKDASR ARDANPLGKG DAIGATQGRI EARSH
|
|---|
| |