| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_I2022 |
|---|
| Symbol | ligA |
|---|
| ID | 3848788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007651 |
|---|
| Strand | + |
|---|
| Start bp | 2290320 |
|---|
| End bp | 2292395 |
|---|
| Gene Length | 2076 bp |
|---|
| Protein Length | 691 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637841691 |
|---|
| Product | DNA ligase, NAD-dependent |
|---|
| Protein accession | YP_442546 |
|---|
| Protein GI | 83720010 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGAT CCCCAGTTGA ACCGTCCGCC GGCCAGCCGG CGAAGCGCGC CGCATGGCTG
CGCGCCGAGC TCGAGCGGGC GAACTACGCA TATTACGTGC TCGACCAGCC GGACCTGCCC
GACGCCGAGT ACGACCGCCT CTTCGCCGAA CTCCAGCAGA TCGAGGCCGA GCACCCCGAT
CTCGTCACGC CCGATTCGCC GACGCAGCGC GTCGGCGGCG AGGTCGCGAG CGGCTTCACG
CCGGTCGTTC ACGATACGCC GATGCTGTCG CTCAACAACG GTTTTTCCGA CGACGACGTC
GTCGCGTTCG ACAAGCGCGT CGCCGACGGC CTCGACAAGC CGACCGACCT CGCCGGCACC
GTGACCGAGC CTGTCGAATA CGCGTGCGAG CTGAAGTTCG ACGGCCTGGC GATCTCGCTG
CGCTACGAGA ACGGCCGCTT CGTGCAGGCA TCGACGCGCG GCGACGGCAC GACGGGCGAA
GACGTCACCG AGAACATCCG CACGGTCCGC TCGATTCCGC TGACGCTCAA GGGCAAGCGC
GTGCCGCGCA TGCTCGACGT GCGCGGCGAA GTGCTCATGT TCAGGCGCGA TTTCGCGCGC
TTGAACGAGC GTCAGCGCGC GGCGGGCCAG CGCGAATTCG CCAATCCGCG CAACGCGGCG
GCGGGTAGCC TGCGGCAGCT CGATTCGAAG ATCACCGCGT CGCGGCCGCT TTCGTTTTTC
GCCTACGGGA TCGGCGTGCT CGACGGCGTC GAGATGCCCG ACACGCACAG CAGCCTGCTC
GACTGGTACG AGACGCTCGG GCTGCCGGTG AACCGCGAGC GCGCGGTCGT GCGCGGCGCG
GCGGGCCTGC TCGAGTTCTT CCATTCGGTG GGCGCGCGGC GCGAGTCGCT GCCGTACGAC
ATCGACGGCG TCGTCTACAA GGTGAATCGC CGCGACGAGC AGGATCGGCT CGGCTTCGTG
TCGCGCGCGC CGCGCTTCGC GCTCGCGCAC AAGTTCCCCG CGCAGGAGGC GCTGACGAAG
CTCGTCGCGA TCGACGTGCA GGTCGGCCGC ACGGGCGCGA TCACGCCGGT CGCGCGTCTC
GAGCCCGTGT TCGTCGGCGG CGCGACCGTC ACGAACGCGA CGCTGCACAA CGAGGACGAG
GTGCGCCGCA AGGACATCCG GATCGGCGAC ACGGTCATCG TGCGCCGCGC GGGCGACGTG
ATTCCCGAAG TGGTGTCGGC CGTGTTCGAC CGGCGTCCCG CCGACGCGCG CGAGTTCGTG
ATGCCGACCG AGTGCCCGGA ATGCGGTTCG CGGGTCGAGC GATTGCCCGA CGAGGCGATC
GCGCGCTGCA CGGGCGGGCT CTTCTGCCCC GCGCAGCGCA AGCAGGCGCT CTGGCACTTC
GCGCAGCGCC GCGCGCTCGA CATCGACGGG CTCGGCGAGA AGATCATCGA TCAGCTCGTC
GAGCAGAACC TCGTGCGCAC GCCGGCCGAT CTGTTCAATC TCGGCTTCTC GACGCTCGTC
GAGCTCGATC GTTTTGCGGA GAAGTCCGCG CAGAACCTGA TCGACTCGCT CGAAAAGGCG
AAGCACACGA CGCTCGCGCG CTTCATTTAC GCGCTCGGCA TCCGGCACGT CGGCGAATCG
ACGGCGAAGG ACCTCGCGAA GCACTTCGGC TCGCTCGATC CGATCATGGA CGCGTCGATC
GACGAATTGC TCGAAGTCAA TGACGTCGGG CCGATCGTCG CCGAATCGAT CCATCAGTTC
TTCGCCGAGG CGCACAATCG CACGGTGATC GAGCAACTGC GCGCGAAGGG CAAAGTCACG
TGGCCCGAAG GGCCGCCCGC GCCGCGCGCG CCGCAGGGCG TGCTCGCGGG CAAGACCGTC
GTGCTGACGG GCACGCTGCC GACGCTCACG CGGGAAGCCG CGAAGGAGAT GCTCGAGGCG
GCGGGCGCGA AGGTCGCGGG CTCGGTGTCG AAGAAGACCG ATTACGTCGT CGCGGGCGCC
GACGCGGGCA GCAAGCTCGC GAAAGCCGAG GAGCTCGGCA TTCCGGTGCT GGACGAAGCA
GGCATGCACA AACTTCTGGA GGGCCATGCG CGATGA
|
|---|
| Protein sequence | MARSPVEPSA GQPAKRAAWL RAELERANYA YYVLDQPDLP DAEYDRLFAE LQQIEAEHPD
LVTPDSPTQR VGGEVASGFT PVVHDTPMLS LNNGFSDDDV VAFDKRVADG LDKPTDLAGT
VTEPVEYACE LKFDGLAISL RYENGRFVQA STRGDGTTGE DVTENIRTVR SIPLTLKGKR
VPRMLDVRGE VLMFRRDFAR LNERQRAAGQ REFANPRNAA AGSLRQLDSK ITASRPLSFF
AYGIGVLDGV EMPDTHSSLL DWYETLGLPV NRERAVVRGA AGLLEFFHSV GARRESLPYD
IDGVVYKVNR RDEQDRLGFV SRAPRFALAH KFPAQEALTK LVAIDVQVGR TGAITPVARL
EPVFVGGATV TNATLHNEDE VRRKDIRIGD TVIVRRAGDV IPEVVSAVFD RRPADAREFV
MPTECPECGS RVERLPDEAI ARCTGGLFCP AQRKQALWHF AQRRALDIDG LGEKIIDQLV
EQNLVRTPAD LFNLGFSTLV ELDRFAEKSA QNLIDSLEKA KHTTLARFIY ALGIRHVGES
TAKDLAKHFG SLDPIMDASI DELLEVNDVG PIVAESIHQF FAEAHNRTVI EQLRAKGKVT
WPEGPPAPRA PQGVLAGKTV VLTGTLPTLT REAAKEMLEA AGAKVAGSVS KKTDYVVAGA
DAGSKLAKAE ELGIPVLDEA GMHKLLEGHA R
|
|---|
| |