Gene BTH_I1948 details

Gene Information

• Locus tag: BTH_I1948
• ID: 3846942
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia thailandensis E264
• Kingdom: Bacteria
• Replicon accession: NC_007651
• Strand: +
• Start bp: 2195291
• End bp: 2197174
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 637841617
• Product: outer membrane autotransporter
• Protein accession: YP_442477
• Protein GI: 83718407
• COG category: [I] Lipid transport and metabolism; [R] General function prediction only
• COG ID: [COG3240] Phospholipase/lecithinase/hemolysin
• TIGRFAM ID: [TIGR01414] outer membrane autotransporter barrel domain

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATACCA AATATCGAGG GACGGCGCTC CGCCGAATGA AAATCGATTC GAAGCAAACG 
CGCGCGGTTG CGGCGATCGC GCTCGGCATC GCGCTGGCGC TGCCCGCGGC GGCCTGCGCC 
CAAGCGTTCT ACGCGCTCGG CGACAGCCTG ACCGACAACG GCCGCGTCGT CAGGTTGACC 
GGCATCCTGC CGAACGCGAC GTCGACGATC TTTCGCAACG GCCGCTCGTC GAACGGCCCG 
GTGTGGGCCG AATACTTGCC GAGCCTGATC GGCGCGCGAT TCGCGCCCGA TGACGATTAC 
GCGATCAACG GCGCGCTGAG CGGGCACGGC GGCTATCTCA ACATCATCCC GACGCGCCCG 
ACTTGGCGCT CGCTGCCCGG GTTCGTCGAT CAGGTCGATC AACTGATCGC CGCGCATCCG 
CGCTTGCGGG GCGACGATCT GGTCGGCATC TGGATCGGCA CCAACGACCA GGATCTGACC 
AAGGCGAGCC TGAACGGCAT CGAGCCGTTT CTCGGCGTGC CCCGGCCGGC CAACATCGCG 
GAAATGAGCG CGTACACGCT CACGAACCTC AATGCGCAGG TGCGGCGGTT GATCGGGATC 
GGCGCGCGCC AGTTCGTGAT CCTGAACTTG AACGACGCCA ACGGCACGCG GCCCGGATAT 
GTCGACTACA ACGGCAAGCT GCCCGCGGAT CTCGTGCAGT TCTCGCGGCA AGGTGTCAAC 
GTTCACCTGT TCGACGTGTC GGGCCTGCTG AACCAGATGC GCCGCAATCC GTCCGCATAC 
GGGCTGAACG ACGCGCCGGA CGTGCAATGC CGCCACGTGC CGTCCTGCAA CGGCGGCGTC 
GTCGGCCTGC AAAACACCTA TCTCACGGCG GACGGCACGC ACATGATGAC GAGCGTGCAC 
GAGTACATCG CTCTCTACCT CGCGAATCAG CTGAATGCGC CGGCCGCGAT CTCGACCGCG 
CCGGCGCTCG GGCTCGACGT CGCCCGGGCG AGCGCGCTGT CGGCGCTGAA CATGACCGAC 
AGCGGGCCGC TCGGTGCGCC GCGTGTCGCG CTGTCGGACA AGCTGTCGCT GTTCGCCGAC 
GTCGGCTATA CGCGCAACTT TCACGGCGCG GCAAACGGCA TCGACGCGTT CGACAGCGAT 
GTCGAGATGT TCTCGATCGG CGCCGACTAC AAGCTGTCCG CTGAGTCGAG CGCCGGCGCG 
CTCTTTTCGA GCGGCAACGC GAGCGGCTCG ATCGCCGGCG GGCAAGGGCG GATCGGGATG 
CATGCATACC GGCTCGGCTT CTATCATGCG TTCGACCGCG CCGGCCTGTT CGTGCGTTCG 
TACGTCGGCG CAGGCTGGAG CCAGTATCGG CTCGATCGCG GCGCCGTGCT GCCGGGGGCG 
ATCAGCGCGC ATACCACCGG CTTCGATTTC GGCGGGCTCG TCAAGGCCGG ATTCCTGTTC 
CCGCTTGGCG GCGCGCGGCT TGGCCCCGTT GCCGACATCG GGTACGCGCA GCTCGTCACG 
CGCGGCTACG CGGAGGAGGG CGACCCGATC CTCGCGCAGG ACGTCGGCGT GCAGCGGCTG 
AAGGGCGTAA GCGCCGGAGC GGGCGTGCGC TTCGCGGCGC CGCTCGCGGC GATCGGGCTG 
CGCGCCGGCG AGTTGTCCGC CGAGGCGCAC CTGCGGCACG ATGCGTTCGG CGACCGCACG 
CTCGTCACGG CCCAGCGTTA TGCGCCCGGT CTGCCGATCA GCACGGCCGT CGATGGCGCG 
AGCGCGACCT ATGAGCGGCT GTCGGTCGCG CTCACCGTGA ATCCCGCGAA GCGGTGGCGG 
GGCAAGCTCG CCGTGCAGGC GGATCTCGGC AACGCGCAGC GCCGTTCGTA CACGCTGCTC 
GCGCTGCTGG GCGGCACGTT CTGA 

 

Protein sequence

MHTKYRGTAL RRMKIDSKQT RAVAAIALGI ALALPAAACA QAFYALGDSL TDNGRVVRLT 
GILPNATSTI FRNGRSSNGP VWAEYLPSLI GARFAPDDDY AINGALSGHG GYLNIIPTRP 
TWRSLPGFVD QVDQLIAAHP RLRGDDLVGI WIGTNDQDLT KASLNGIEPF LGVPRPANIA 
EMSAYTLTNL NAQVRRLIGI GARQFVILNL NDANGTRPGY VDYNGKLPAD LVQFSRQGVN 
VHLFDVSGLL NQMRRNPSAY GLNDAPDVQC RHVPSCNGGV VGLQNTYLTA DGTHMMTSVH 
EYIALYLANQ LNAPAAISTA PALGLDVARA SALSALNMTD SGPLGAPRVA LSDKLSLFAD 
VGYTRNFHGA ANGIDAFDSD VEMFSIGADY KLSAESSAGA LFSSGNASGS IAGGQGRIGM 
HAYRLGFYHA FDRAGLFVRS YVGAGWSQYR LDRGAVLPGA ISAHTTGFDF GGLVKAGFLF 
PLGGARLGPV ADIGYAQLVT RGYAEEGDPI LAQDVGVQRL KGVSAGAGVR FAAPLAAIGL 
RAGELSAEAH LRHDAFGDRT LVTAQRYAPG LPISTAVDGA SATYERLSVA LTVNPAKRWR 
GKLAVQADLG NAQRRSYTLL ALLGGTF