Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BTH_I1838 |
Symbol | hrpA |
ID | 3848029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia thailandensis E264 |
Kingdom | Bacteria |
Replicon accession | NC_007651 |
Strand | + |
Start bp | 2065457 |
End bp | 2069599 |
Gene Length | 4143 bp |
Protein Length | 1380 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637841507 |
Product | ATP-dependent helicase HrpA |
Protein accession | YP_442369 |
Protein GI | 83720275 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00763421 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCGAATG TACCTAAAAG TCCCGCGCAA AAACATGCGG GCACGCCGGG CGAGGCGCAG CCCGCCGGCG CGCACGCGCC GCGGCCGCCG CGCCCGCCGC GGGCGCCGTC CGGGCAGGCG GGCGCGCCGC GCGCCGCGCG CCGCGACGCC GGCTCCGAGG CCGCGCGCGC GCCGCATGCG CCGCGCGCGC GGACAGCGCC GAATCCCGTT CCGCCGATCA CGTTTCCCGA AAGCCTGCCC GTGTCGGGCA AGCGCGACGA GATCGCGCGC GCGATCGCCG CTCACCAGGT CGTGATCGTC TGCGGCGAGA CGGGCTCGGG CAAGACCACC CAGTTGCCGA AGATCTGCCT CGCGCTCGGC CGCGGCGTCG GCGCGGGCGG CGCGGGGCTG ATCGGCCACA CGCAGCCGAG GCGGCTCGCG GCGTCGTCGA CGGGCCGCCG GATCGCCGAG GAGCTCGGCA CGCCGTTCGG CGAAGTGGTG GGCTACAAGG TGCGCTTCAC CGACAACCTC GCGCCGGGCG CGTCGGTCAA GCTGATGACG GACGGCATCC TGCTCGCCGA GTCGCAGACC GATCCGCTGC TCAAGGCGTA CGACACCCTC ATCATCGACG AGGCGCACGA GCGCAGCCTG AACATCGATT TTCTGCTCGG CTACCTGAAG CAGATCCTGC CGAGGCGGCC GGACCTGAAG CTGATCGTCA CGTCGGCGAC GATCGACGCG GACCGTTTCG CGCGCCATTT CGGCAGCGAC GAGCGGCCCG CGCCGGTGAT CGAGGTGAGC GGGCGGCTCT ATCCGGTGGA AGTCCGCTAC CGGCCGATCG CCGACGACCG GCCGGCCGCC GTCCGGCACG CGGAAGGCGC GGCGTCCGGG CGCGACCGCG CGAAGAGCGC GCGCGAGGCC GAGCGCGACC TGATGGACGG CATCGTCGAC GCGGTCGACG AGCTGTGCCG CGAGGGCCCG GGCGACGTGC TCGTGTTCCT GCCCGGCGAG CGCGAGATCC GCGACGCCGC CGAGTCGCTG CGCAAGCACC ATCCGCCGCA CACCGAGATC CTGCCGCTGT TCGCGCGGCT GTCGGCGGCC GAGCAGGAGC GCGTGTTCAA GGCGTCGAAC GCGCGGCGGA TCGTGCTCGC GACGAACGTC GCCGAGACGT CGCTCACGGT GCCGGGCATC CGCTACGTCG TCGATACCGG GCTTGCGCGC GTGAAGCGCT ATTCGTACCG GAACAAGGTC GAGCAGTTGC AGATCGAGTC GATCTCGCAG GCGGCCGCGA ACCAGCGCGC GGGCCGCTGC GGCCGCGTCG CCGACGGCAT CTGCATCCGT CTCTACGAGG AAAGCGATTT CGCCGGCCGC GCGCGCTTCA CCGATCCGGA AATCCTGCGC TCGTCGCTCG CATCGGTGAT CCTGCGGATG AAGTCGCTGC ATCTGTCGGC GATCGAATCG TTTCCGTTCA TCGAGCCGCC GCCCGGCCGC GCGATCGCGG ACGGCTATCA ACTGCTCAAC GAGCTCGGCG CGGTCGACGA CGACAACGCG CTCACGCCGC TCGGCCGCGA GCTCGCGCGG TTGCCGCTCG ATCCGCGCGT CGGCCGGATG ATCCTCGCCG CGCGCGACCA GCAGGCGTTG CGCGAAGTGC TCGTGATCGC GAGCGCGCTG TCCGTGCAGG ACCCGCGCGA TCGCCCGATC GACGCGCAGG AGCAGGCCGA CCAGGCGCAC CGGCGCTTCG CCGACGAGCG CTCCGAGTTC CTCCAGTGGC TGAGGATCTG GGCGTGGTTC GAGGAGGCGG TCGCGCACAA GAAGTCGAAC CGGCAACTCG TCGACGCGTG CCGGCAGCAT TTCCTGTCGC ACCTGCGGCT GCGCGAATGG CGCGACGTCC ACTCGCAGCT CCTGACCGTC GTGCGCGAGC ACGGCTGGCG CCTGAACGAG GCCGACGCGA CGTTCGAGCA GATCCATCTG TCGCTGTTGA CGGGGCTGCT CGGCAACATC GGCTTCAAGG CCGAGGACGA GCCGCACTAT CTCGGCGCGC GCGGGATCAA GTTCCATCTG TGGCCGGGCT CCGCGCTCGT GAAGAAGGCG GGGCGCTGGG TGATGGCGGC CGAGCTCGTC GAGACGAGCC GCCTCTATGC GCGCTGCATC GCGAAGATCG AGCCGGAATG GATCGAGCGC ATCGGCGCGC ACCTGTTGAA GAAATCGCTG TCCGAGCCGC ACTGGGAGAA GCGTCCCGCG CAGGTCACCG CGTTCGAGCG CGCGACGCTG TACGGGCTCA CCGTCTATCA CCGGCGGCGC GTCGCGTTCG GCCGGCAGGA CCCGGCGCGC GCGCGGGAGC TGTTCATCCG CGGCGCGCTC GTCGACGGCG AATTCGACAC GAAGCTCGCG TTCTTCGCGC ACAACCGCAA GCTGCTCGCC GACATCGAGC AGCTCGAGCA CAAGTCGCGC CGGCAGGACG TGCTCGTCGA CGACGAGCTG ATTCACGCGT TCTACGATCA GGCGATTCCG TCCGGCATCC ACACGGGCGC CGCGTTCGAG CGCTGGTACC GCGACGAGGT GAAAAAGAGC GGGCAGCCGG AAGACAAGCT GCGCCTGCTG TATCTGTCGC GCGACGATCT GATGCGCCAC GAGGCGGCGG GCGTGACGAC CGATCTGTTT CCGAAGCGCG CGACGATGGC GGGCGTCGAG ATGGCGCTCA CGTACCACTT CGAGCCCGGC TCGCCGCGCG ACGGCGTGAC GCTCGCGGTG CCGCTCTTCG CGCTGAACCA GGTCGACGCG CGCCGCGCCG AGTGGCTCGT GCCCGGGATG CTGAAGGAGA AGGCGCACCT GCTGCTGAAG TCGCTGCCGC AGAAGCTGCG CCGCCATTGC GTGCCGCTGC CAGAGTACGC GGCGGGCTTC GTCGAGCGCG CCGGGCGCGA GCGCTTCGGC GCGGGCGGCC TCGTCGACGC GCTGATCGCC GACGTCCGCG AGCGGACGCA GGTCGCGACG AAGACGTCCG ACTTCAAGCT CGAGACGCTG CCCGCGCACC TGTTCATGAA CTTCAAGGTG ATCGACGAGC ACGGCCGGCA GCTCGCGATG GGGCGCAATC TCGCGCAGTT GCGCGCGGAG TTGGGCGCGC AGGCGCAGCA GCACTTTCAG AAGATCGCCG CCGCGGCAAC GCTCGCGCCG GCGGGCGCGC CTTCCGGCGC GGCCGCCGCC GAGGCGCCCG CGGGTGGCGC GCGGCCGCGA GGCGCGCAAG GCGGCGGGGC GACGCCCGCC GTCGCGCCGT CGGCGGCGCA AGCGGGCGCG GCCGCCGCCG GCGCGACCGC GCTTTATGAG AACCTGACGA CGTGGAACTT CGGCAAGCTG CCGGAACTCC TCGAGATCCG CCGGCGCGGC GAGACGCTGT TCGGCTACCC GGCGCTCGTC GACCGCGGCA CGCACTGCGA CGTCGAGGTG TTCGACTCGC CCGACGAGGC GGCGCGAATC CACCGCGCGG GCCTGCGGCG CCTGTTCGCG TTGCAGCTGA AGGAGCCGAT CAAGTACCTG GAGAAGAACC TGCCGGGGCT GCGCGAGATG GCGATGCAGT ACATGTCGCT CGGCACGCAG GACGAACTGC GCGACCAGTT GATCGCGACC GCGCTCGACC GCGCGTGCCT GCAGGACCCG CTGCCCGCCG ACGACGCGAG TTTTCACGCG CGCCGCGACG AGGGCAGGAG CCGGCTGAAC CTGCTCGCGC AGGAGATGGC GCGGCTCGTC GGGCAGATCC TCGCCGAGTA CGCGGGGCTC GCGAAGAAGC TCGCGCAGGC GAAGCCGTTC CCGGCCGCGC ACGCGGACCT GCAGGGCCAG CTCGCCGCGC TCGTCGGCAA GCGCTTCGTC ATCGACACGC CTTACGCGCA GCTTGCGCAT TTCCCGCGCT ACCTGAAGGG CATCGCGCTG CGAATCGACA AGCTGAAGGC CGATCCCGCC CGCGACGCGC GGCAGGCGGC CGAGCTGCAG CCGCTCGCGC AGCATTATCA GCGCTCGATT GTGCAGCGCG GCGGCGTCGC GGATGCGCGG CTCGCCGAGT TCCGGTGGCT GCTCGAGGAA CTGCGGATCT CGCTTTTCGC GCAGGAACTG CGCACGCCGA TGCCGGTGTC GGTCAAGCGG CTCTACAAAG TGTGGGAGTC GATGCAGCGC TGA
|
Protein sequence | MSNVPKSPAQ KHAGTPGEAQ PAGAHAPRPP RPPRAPSGQA GAPRAARRDA GSEAARAPHA PRARTAPNPV PPITFPESLP VSGKRDEIAR AIAAHQVVIV CGETGSGKTT QLPKICLALG RGVGAGGAGL IGHTQPRRLA ASSTGRRIAE ELGTPFGEVV GYKVRFTDNL APGASVKLMT DGILLAESQT DPLLKAYDTL IIDEAHERSL NIDFLLGYLK QILPRRPDLK LIVTSATIDA DRFARHFGSD ERPAPVIEVS GRLYPVEVRY RPIADDRPAA VRHAEGAASG RDRAKSAREA ERDLMDGIVD AVDELCREGP GDVLVFLPGE REIRDAAESL RKHHPPHTEI LPLFARLSAA EQERVFKASN ARRIVLATNV AETSLTVPGI RYVVDTGLAR VKRYSYRNKV EQLQIESISQ AAANQRAGRC GRVADGICIR LYEESDFAGR ARFTDPEILR SSLASVILRM KSLHLSAIES FPFIEPPPGR AIADGYQLLN ELGAVDDDNA LTPLGRELAR LPLDPRVGRM ILAARDQQAL REVLVIASAL SVQDPRDRPI DAQEQADQAH RRFADERSEF LQWLRIWAWF EEAVAHKKSN RQLVDACRQH FLSHLRLREW RDVHSQLLTV VREHGWRLNE ADATFEQIHL SLLTGLLGNI GFKAEDEPHY LGARGIKFHL WPGSALVKKA GRWVMAAELV ETSRLYARCI AKIEPEWIER IGAHLLKKSL SEPHWEKRPA QVTAFERATL YGLTVYHRRR VAFGRQDPAR ARELFIRGAL VDGEFDTKLA FFAHNRKLLA DIEQLEHKSR RQDVLVDDEL IHAFYDQAIP SGIHTGAAFE RWYRDEVKKS GQPEDKLRLL YLSRDDLMRH EAAGVTTDLF PKRATMAGVE MALTYHFEPG SPRDGVTLAV PLFALNQVDA RRAEWLVPGM LKEKAHLLLK SLPQKLRRHC VPLPEYAAGF VERAGRERFG AGGLVDALIA DVRERTQVAT KTSDFKLETL PAHLFMNFKV IDEHGRQLAM GRNLAQLRAE LGAQAQQHFQ KIAAAATLAP AGAPSGAAAA EAPAGGARPR GAQGGGATPA VAPSAAQAGA AAAGATALYE NLTTWNFGKL PELLEIRRRG ETLFGYPALV DRGTHCDVEV FDSPDEAARI HRAGLRRLFA LQLKEPIKYL EKNLPGLREM AMQYMSLGTQ DELRDQLIAT ALDRACLQDP LPADDASFHA RRDEGRSRLN LLAQEMARLV GQILAEYAGL AKKLAQAKPF PAAHADLQGQ LAALVGKRFV IDTPYAQLAH FPRYLKGIAL RIDKLKADPA RDARQAAELQ PLAQHYQRSI VQRGGVADAR LAEFRWLLEE LRISLFAQEL RTPMPVSVKR LYKVWESMQR
|
| |