| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_I1638 |
|---|
| Symbol | rpsA |
|---|
| ID | 3848262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007651 |
|---|
| Strand | + |
|---|
| Start bp | 1847019 |
|---|
| End bp | 1848731 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637841307 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_442175 |
|---|
| Protein GI | 83719745 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.82562 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACC TGCAAACCTC CAACCCGAAT ACCGAATCCT TTGCGGCTCT GTTCGAAGAG
TCGCTGACCC GCCAAGACAT GCGCGCCGGC GAAGTGATCT CCGCCGAAGT CGTGCGTGTC
GACCACAACT TCGTGGTCGT CAATGCCGGC CTGAAGTCCG AGGCCTACAT TCCGATCGAG
GAATTCCTGA ACGATCAGGG CGAGGTTGAG GTTCAGGCGG GCGATTTCGT TTCCGTCGCG
ATCGACGCGC TGGAAAACGG CTACGGCGAC ACGATCCTGT CGCGCGACAA GGCGAAGCGT
CTGGCTTCGT GGCTGTCGCT GGAAAAGGCG CTCGACAACA ACGAACTCGT CACGGGCACG
ATCACCGGCA AGGTGAAGGG CGGCATGACG GTGATGGTCA ACGGCATCCG CGCGTTCCTG
CCGGGCTCGC TCGTCGACAC GCGTCCCGTC AAGGACACGA CCCCGTACGA AGGCAAGACG
CTCGAGTTCC GCGTGATCAA GCTCGACCGC AAGCGCAACA ACGTCGTGCT GTCGCGCCGC
GCGGTGATCG AAGCCACGCA AGGCGAAGAG CGCGCGAAGC TGCTCGAGAC GCTCAAGGAA
GGCGCGATCG TCAACGGCGT GGTCAAGAAC ATCACCGATT ACGGCGCGTT CGTGGATCTG
GGCGGCATCG ACGGCCTGCT GCACATCACC GACATCGCAT GGCGCCGCGT GCGTCACCCG
AGCGAAGTCC TCTCGGTCGG CCAGGAAGTC ACCGCGAAGA TCCTCAAGTT CGACCAAGAG
AAGAACCGCG TGTCGCTCGG CATCAAGCAA CTGGGCGACG ATCCGTGGGA AGGCATCTCG
CGCCGCTACC CGTCGGGCAC GCGCCTGTTC GGCAAGGTCA CGAACATCAC CGACTACGGC
GCGTTCGTCG AAGTGGAATC GGGCATCGAA GGCCTCGTCC ACGTGTCGGA AATGGACTGG
ACGAACAAGA ACGTCGCTCC GTCGAAGGTC GTTCAGCTCG GTGACGAAGT CGAAGTCATG
GTGCTCGAGA TCGACGAAGA CCGTCGTCGT ATCAGCCTCG GCATGAAGCA GTGCAAGCCG
AATCCGTGGG ACGACTTCAG CCGCAACTTC AAGAAGGGCG ACAAGATCAC GGGCGCGATC
AAGTCGATCA CCGACTTCGG CGTGTTCATC GGCCTGCCGG GCGGCATCGA CGGCCTCGTC
CACCTGTCGG ACCTGTCGTG GAGCGAAGCC GGCGAGGAAG CCGTTCGCAA GTACAAGAAG
GGCGATGAAG TCGAGGCGAT CGTGCTCGGC ATCGACGTCG AGAAGGAACG CATTTCGCTC
GGCATCAAGC AGCTCGAAGG CGATCCGTTC AGCAACTACG TCGCGATGAA CGACAAGGGT
TCGATCGTCG ACGGCGTCGT GAAGTCGGTC GATGCGAAGG GCGCGGTCAT CACGCTGACG
CCGGACGTCG AAGGCTACCT GCGTGCGTCG GAAATCTCGC AGGATCGCGT CGAAGACGCG
CGCAACGTGC TGAAGGAAGG CGAGAAGGTC AACGCGATGG TGATCAACAT CGATCGCAAG
TCGCGCGGCA TCAACCTGTC GATCAAGGCG AAGGATTCGG CCGAGCAGCA GGAAGCGATG
CGCGGCCTGC AAGCCGATTC GAGCGCCGCT GCGACGGGCA CGACCAACCT CGGCGCGCTG
CTGAAGGCGA AGCTCGACGG CCAGAACCAG TAA
|
|---|
| Protein sequence | MSDLQTSNPN TESFAALFEE SLTRQDMRAG EVISAEVVRV DHNFVVVNAG LKSEAYIPIE
EFLNDQGEVE VQAGDFVSVA IDALENGYGD TILSRDKAKR LASWLSLEKA LDNNELVTGT
ITGKVKGGMT VMVNGIRAFL PGSLVDTRPV KDTTPYEGKT LEFRVIKLDR KRNNVVLSRR
AVIEATQGEE RAKLLETLKE GAIVNGVVKN ITDYGAFVDL GGIDGLLHIT DIAWRRVRHP
SEVLSVGQEV TAKILKFDQE KNRVSLGIKQ LGDDPWEGIS RRYPSGTRLF GKVTNITDYG
AFVEVESGIE GLVHVSEMDW TNKNVAPSKV VQLGDEVEVM VLEIDEDRRR ISLGMKQCKP
NPWDDFSRNF KKGDKITGAI KSITDFGVFI GLPGGIDGLV HLSDLSWSEA GEEAVRKYKK
GDEVEAIVLG IDVEKERISL GIKQLEGDPF SNYVAMNDKG SIVDGVVKSV DAKGAVITLT
PDVEGYLRAS EISQDRVEDA RNVLKEGEKV NAMVINIDRK SRGINLSIKA KDSAEQQEAM
RGLQADSSAA ATGTTNLGAL LKAKLDGQNQ
|
|---|
| |