Gene BTH_I1542 details

Gene Information

• Locus tag: BTH_I1542
• Symbol: ribD-1
• ID: 3847428
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia thailandensis E264
• Kingdom: Bacteria
• Replicon accession: NC_007651
• Strand: -
• Start bp: 1741844
• End bp: 1742980
• Gene Length: 1137 bp
• Protein Length: 378 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 637841213
• Product: riboflavin biosynthesis protein RibD
• Protein accession: YP_442086
• Protein GI: 83718892
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCTCGG AAAACGACTT CACCCACATG CAGCGCGCGC TCGCGCTCGC CGCGCGCGGG 
ATGTACACGA CGACGCCGAA CCCGCGCGTC GGCTGCGTGA TCGTCAAGGA CGACGTCGTG 
ATCGGCGAGG GCTTCACGCA GCCGGCGGGC CAGGATCACG CGGAAGTGCA GGCGCTGAAG 
GACGCGCGCG CGCGCGGCAA CGATCTGCGC GACGCAACCG TCTACGTGAC GCTCGAGCCG 
TGCAGCCACT TCGGCCGCAC GCCGCCATGC GCGCACGCGC TGATCGACGC GCGCGTCGGC 
AAGGTCGTCG CGGCGATGGA GGACCCGAAT CCGCAGGTGT CCGGGCGCGG CCTCGCGATG 
CTGCGCGATG CGGGCATCGA CGTGCGCTGC GGCCTGCTCG CGCACGAGGC GCACGAGATG 
AACATCGGCT TCGTGTCGCG GATGACGCGC GGCCGCCCGT GGGTGCGGAT GAAGACGGCC 
GCGTCGCTCG ACGGCCGCAC CGCGCTCGCG TCCGGCGAGA GCAAATGGAT CACGGGCGAC 
GCCGCGCGCG ACGACGGCCA CAAGTGGCGC GCGCGCGCGT GCGCGATCCT CACGGGCATC 
GGCACCGTGC GCGAAGACGA TCCGCAGCTC AACGTGCGCG GCGTCGACAC GCCGCGCCAG 
CCGCGCCGCG TGCTGATCGA CAGCCGCCTC GACATCCCGC TCACCGCGCG CCTGCTCGAA 
GGCGGCTCGC TCCTCATCTT CTGCGGCGCG CTCGACGCGC AAAGCGAAGC GCGCGCTCAA 
GCGCTGCGCG CGCGCGGCGC GGAAATCGTG CCGCTCGCGA ACGTGCGCGG CAAGGTCGAT 
CTGCCCGCGA TGCTCGCCGC GCTCGGCGAG CGCGGCATCA ACGAACTGCA CGTCGAGGCG 
GGCCACAAGC TGAACGGCTC GCTGCTGCGC GAGCGCTGCG TCGACGAGCT GCTCGTCTAT 
CTCGCGCCGA GCCTGCTCGG CGCGGACGCG GCCGCGATGT TCGATCTCGC CGCGCCGGCG 
TCGCTCATCG ACCGCACGCG GCTCGCGTTC CACAGCGTCG AGCGCGTCGG CGACGACCTG 
CGCATCCTCG CGCGCTTCGC GAGCGCTCAC GCGAGCGCCT CCCCCACTCA TTCATAA 

 

Protein sequence

MFSENDFTHM QRALALAARG MYTTTPNPRV GCVIVKDDVV IGEGFTQPAG QDHAEVQALK 
DARARGNDLR DATVYVTLEP CSHFGRTPPC AHALIDARVG KVVAAMEDPN PQVSGRGLAM 
LRDAGIDVRC GLLAHEAHEM NIGFVSRMTR GRPWVRMKTA ASLDGRTALA SGESKWITGD 
AARDDGHKWR ARACAILTGI GTVREDDPQL NVRGVDTPRQ PRRVLIDSRL DIPLTARLLE 
GGSLLIFCGA LDAQSEARAQ ALRARGAEIV PLANVRGKVD LPAMLAALGE RGINELHVEA 
GHKLNGSLLR ERCVDELLVY LAPSLLGADA AAMFDLAAPA SLIDRTRLAF HSVERVGDDL 
RILARFASAH ASASPTHS