| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_I1396 |
|---|
| Symbol | |
|---|
| ID | 3848777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007651 |
|---|
| Strand | + |
|---|
| Start bp | 1569461 |
|---|
| End bp | 1571200 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637841068 |
|---|
| Product | 4-hydroxybenzoate transporter |
|---|
| Protein accession | YP_441942 |
|---|
| Protein GI | 83719999 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00895] benzoate transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGCG CCCCGGCACG TTCTATCTGC TGCGTCCGGA CCAGCATGTG TGCGCGCGCT
TTCGCACGGC GCAAGCGAGC GCGGTGCGCG CGGCGCTCGC CCGCGCGATC TGCCGCGCGT
GAGCGGAAAA CCAACGAACG AGACCAGGAG ACACCCGATG CACCTCGACA CCCGCTTGCG
CCTGCCCGAT CCGGACGCGT TCTACGAAGC GCTGATCGAC ATGCACCGCG ATCTGCCCGA
CAGCGAGAGC CAGCTCGTCA ACGCGAAGCT GATCCTGCTG CTCGCGAACC AGATCGGCGA
CCTCGACGTG CTGCGCGAAG CGATGGCGCT CGCGCGCAGC GGCGCGGCCG TGCTCGAAGG
CGCGCCCGGC GCGCCCGCGC TGCAATGAGC GCGGCGGCGA GTGCCGCGCG CGTGCTCGAA
GTTGAGCGCG TGATCGACGA CACGCACCGG CCCGCGTTTC ACGCGATGCT GCTCGCGCTG
TGCGGGCTGT GCCTCGTGAT CGACGGTTTC GATGCGCAGG CGATGGGCTA CGTCGCGCCG
AGCGTGATCG CCGAGTGGGG CGTGAAGAAG CAGGCGCTCG GGCCCGTCTT CAGCGCGAGC
CTGTTCGGGA TGCTGCTCGG CGCGCTCGGC CTGTCGGTGC TCGCCGACCG GATCGGCCGG
CGGCCGGTAT TGATCGGCGC GACGCTGTTC TTCGCGCTGA CGATGCTCGC GACGCCGTTC
GCGACATCGA TTCCGACGCT GATCGCGCTG CGCTTCGTCA CGGGCCTGGG GCTCGGCTGC
ATCATGCCGA ACGCGATGGC GCTCGTCGGT GAATGCAGCC CGGGCGCGCA CCGCGTGAAG
CGGATGATGA TCGTGTCGTG CGGCTTCACG GCCGGCGCGG CGCTGGGCGG CTTCGTCAGC
GCGGCGCTGA TTCCGGCGTT CGGCTGGCGC GCGGTGTTCT TCGTCGGCGG CGCGGTGCCG
CTCGCGCTCG CGGCCGCGAT GGCCGCGCGC CTGCCCGAAT CGCCGCAACT GCTCGTGCTG
CGCGGCCGGC ACGACGCGGC GCGCGCGTGG CTCGCGAAGT TCGCGCCGCA GCTCGCGGTC
TCGCCCGATA CGCGGCTCGT CGTGCGCGAA GCGGGGCCGC AGGGCGCGCC CGTCGCCGAG
CTGTTCCGCT CGGGGCGCGC GAGCGTCACG CTGCTGCTCT GGGCGATCAA CTTCATGAAC
CTGATCGACC TGTACTTCCT GTCGAACTGG CTGCCGACCG TGATGCGCGA CGCGGGCTAC
GCGAGCGGCA CGGCCGTCAT CGTCGGCACC GTGCTGCAGA CGGGCGGCGT GATCGGCACG
CTGTCGCTCG GCCGGTTCAT CGAACGGTAC GGCTTCGTGC GCGTGCTGTT CGCCTGCTTC
GCGTGCGCGG CGATCGCGGT CGGCCTGATC GGCTCGGTCG CGCATGCGTT TTACTGGCTG
CTCGCAGCCG TGTTCGTCGG CGGCTTTTGC GTCGTTGGCG GACAGCCCGC GGTCAACGCG
CTCGCGGGCC ATTATTACCC GACGTCGCTG CGCTCGACGG GCATCGGCTG GAGCCTCGGC
GTGGGCCGCG TCGGCTCCGT GCTCGGGCCG CTCGTCGGCG GGCAGCTGAT CGCGCTCGGC
TGGTCGAACG ACGCGCTCTT TCACGCGGCG GCCGTGCCGG TGCTGTGCTC GGCCGTCTTC
GTGATCGGCC TCGCGAGCGT GACGCGGCGG CGCGGCACGG CCGCGCCGAA CGTCGCTTGA
|
|---|
| Protein sequence | MTRAPARSIC CVRTSMCARA FARRKRARCA RRSPARSAAR ERKTNERDQE TPDAPRHPLA
PARSGRVLRS ADRHAPRSAR QREPARQREA DPAAREPDRR PRRAARSDGA RAQRRGRARR
RARRARAAMS AAASAARVLE VERVIDDTHR PAFHAMLLAL CGLCLVIDGF DAQAMGYVAP
SVIAEWGVKK QALGPVFSAS LFGMLLGALG LSVLADRIGR RPVLIGATLF FALTMLATPF
ATSIPTLIAL RFVTGLGLGC IMPNAMALVG ECSPGAHRVK RMMIVSCGFT AGAALGGFVS
AALIPAFGWR AVFFVGGAVP LALAAAMAAR LPESPQLLVL RGRHDAARAW LAKFAPQLAV
SPDTRLVVRE AGPQGAPVAE LFRSGRASVT LLLWAINFMN LIDLYFLSNW LPTVMRDAGY
ASGTAVIVGT VLQTGGVIGT LSLGRFIERY GFVRVLFACF ACAAIAVGLI GSVAHAFYWL
LAAVFVGGFC VVGGQPAVNA LAGHYYPTSL RSTGIGWSLG VGRVGSVLGP LVGGQLIALG
WSNDALFHAA AVPVLCSAVF VIGLASVTRR RGTAAPNVA
|
|---|
| |