Gene BTH_I0985 details

Gene Information

• Locus tag: BTH_I0985
• Symbol: msbA
• ID: 3848319
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia thailandensis E264
• Kingdom: Bacteria
• Replicon accession: NC_007651
• Strand: +
• Start bp: 1120817
• End bp: 1122607
• Gene Length: 1791 bp
• Protein Length: 596 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637840657
• Product: lipid A export ATP-binding/permease protein MsbA
• Protein accession: YP_441539
• Protein GI: 83721115
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components
• TIGRFAM ID: [TIGR02203] lipid A export permease/ATP-binding protein MsbA

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.426098
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAGCGTCA AGCCTACCCT AAGCAAACCG ATCGGCGGCC AGGATGCGTC GTCGCCTGCC 
GTCGTGATGC GCCGCCTCTG GCCGTACGTC AAGCCGCTCG TCTGGGTGCT CGTCGCCGGC 
GTGCTCGCGA TGGCCGCGGT CGCCGCGACG GAAGCCGGGA TTCCCGCGCT ACTCAAGCCG 
CTGCTCGATC ACGGTTTCGG CTCGAAGGGC GACATGACGA CGAAACTGTA CGTGCCCGCC 
GCGGTCGTCG GCCTCGCGCT TGCGCGCGCG ATCGCCCAGT ACGCGTCCGG CTATCTGCTG 
CAGTACGTGT CGAACCGCAT CCTGCTCGAT CTACGCATCC AGATGTTCGA GCGGATGATT 
CACACGGGCG TGTCGTTCTT CCAGCGCGAG ACGGCGAGCA CGGTGATCAA CGCAGTCGTG 
TTCGAAGTGA ACCAGGTGTT GAGCGTATTG ATGGGCGTCA TGATCACGCT GGTGCGTGAT 
TCGCTGACGG TCGTTTTCCT GCTCGGCTAT CTGTTCTATC TGAACTGGCG CTTGACGCTC 
ATCGTCGCGA TCCTGTTGCC GTGCATCGGC TGGCTCGTCG GCAAGATCAA CCGCCGGCTG 
CGCCGCCTGA ATCGCGAGCA CCAGACGCTC ACGAACCAGC TCGCGTATAT CGTCGAGGAG 
ACCGTCGGCG GCTACAAGGT CGTCAAGGTT CACAACGGCG AGTCGTACGA GATCGGGCGC 
TTCAACGAGT TGAGCCGCAA GCTGCGCGGC TATTCGATGC GCATGACGGT GTCGGGCGGC 
CTCGCCCAGC CGCTCACGCA GTTTCTCGCG TCGATAGCGC TCGCGGTCGT GCTGACGATC 
GCGGTTGTCC AGTCATCGAA CGACCAGACG ACGGTCGGCG GCTTCGTTGC GTTCGTGACC 
GCAATGCTGC TCATCATCTC GCCGCTCAAG CACCTGATGG ACGTAAACCA GCCGTTGCAG 
CGCGGGATGA CGGCGGCTGA GCTGATCTTC GGGCTGATCG ACGAGCCGCG CGAACCCGAA 
GGGGGCGGCA AGCCGCTCGC GCGCGCATCG GGTGCGATCG AGTTCAGCCA TGTGTCGTTC 
TCGTACGGGA TATCGCGCGA CGGTCGGCAG ACGCTCGACG ACGTGTCGTT TACCGTCGCG 
CCGGGCGAGA TGGTCGCGCT CGCGGGACCG TCGGGCAGCG GCAAGACGAC GCTCGTCAAT 
CTGTTGCCGC GCTTCTTCGA TCCGTCGTCG GGCACGGTGC GCGTCGACGG CGTCGCGCTG 
CCCGAGTACA GCTTGCACGA CCTGCGCAAT CAGATCGCGA TGGTGAGTCA GGACGTCGTG 
CTCTTCAACG ACACGATCGC CGCGAACGTC GCGTACGGCC AGACGCCCGA GCGCGACGGC 
GTCGAGGCGG CGCTGCGCGC GGCGAATCTG TGGGAGACCG TCACCGCGAT GCCCGACGGC 
ATCGACACGC TCGTGGGAGA CAACGGGATG CGGCTGTCGG GCGGTCAGCG CCAACGGCTC 
GCGATTGCCC GCGCGATCTA CAAGGATGCG CCGATCCTGA TTCTCGACGA GGCGACGTCC 
GCGCTCGATT CCGAATCCGA GCGGCACGTG CAGGCGGCGC TCGAGACGCT GATGAAGGGG 
CGCACGACGC TCGTGATCGC ACACCGCCTG TCGACGATCG AGCGCGCGGA TCGGATTCTC 
GTGCTCGAAG GCGGCAAGAT TGTCGAAAGC GGCAGTCATC GCGAACTGCT CGAGCAGGGC 
GGGCTGTACG CGCATCTGCA TCGCATCCAG TTCCAGCAGG ACGCGGGGTG A 

 

Protein sequence

MSVKPTLSKP IGGQDASSPA VVMRRLWPYV KPLVWVLVAG VLAMAAVAAT EAGIPALLKP 
LLDHGFGSKG DMTTKLYVPA AVVGLALARA IAQYASGYLL QYVSNRILLD LRIQMFERMI 
HTGVSFFQRE TASTVINAVV FEVNQVLSVL MGVMITLVRD SLTVVFLLGY LFYLNWRLTL 
IVAILLPCIG WLVGKINRRL RRLNREHQTL TNQLAYIVEE TVGGYKVVKV HNGESYEIGR 
FNELSRKLRG YSMRMTVSGG LAQPLTQFLA SIALAVVLTI AVVQSSNDQT TVGGFVAFVT 
AMLLIISPLK HLMDVNQPLQ RGMTAAELIF GLIDEPREPE GGGKPLARAS GAIEFSHVSF 
SYGISRDGRQ TLDDVSFTVA PGEMVALAGP SGSGKTTLVN LLPRFFDPSS GTVRVDGVAL 
PEYSLHDLRN QIAMVSQDVV LFNDTIAANV AYGQTPERDG VEAALRAANL WETVTAMPDG 
IDTLVGDNGM RLSGGQRQRL AIARAIYKDA PILILDEATS ALDSESERHV QAALETLMKG 
RTTLVIAHRL STIERADRIL VLEGGKIVES GSHRELLEQG GLYAHLHRIQ FQQDAG