Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BTH_I0486 |
Symbol | |
ID | 3847038 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia thailandensis E264 |
Kingdom | Bacteria |
Replicon accession | NC_007651 |
Strand | - |
Start bp | 538242 |
End bp | 539783 |
Gene Length | 1542 bp |
Protein Length | 513 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637840159 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_441043 |
Protein GI | 83718503 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCAAACT TCCGGTATGA CTTCCCTTTT GCCATGAAAG CCAGTCTCCA ACTTCGCCTG TCGCAGCATC TCGCGCTCAC GCCCCAGCTT CAGCAATCGA TCCGGCTGCT GCAGTTGTCG ACGCTCGAAC TGCAGCAGGA AGTCGCAACG GCGATCGCGC AGAACCCGCT GCTCGAGAAC GACGACGACT GGATCGCGAG CCCCCTGCGC GTCGCGGCCG ACGGCTCGGT GATCGCGCAG ACGCCCGCGT CGTCCTCGCC CGAGCCGATG TCCGGCGCGT CGAACGGCAC GACTGCGACG AATGAGCGCA CCGAGCGCGA CGAAACCGCC GGCGTCGACG AATACGACGG CTATTCGGCC GACGGCGGCG ACGCGAGCCA GTGGAATCTC GACGACTTCG GCCGCTCCCC CGCCGCATCC GACGACGACG ATCTGCCGCC GATGCAGATC CACGAAACCT CGACGTCGCT GCGCGATCAT CTGATGGCGC AGTTGCGCGT CACGCAGGCG AGCCCGCGCG ATCGCGCGCT CGTCACGTTC CTGATCGAAT CGCTCGACGA CGACGGCTAC CTGAGCGCGT CGCTCGACGA AGTGCTCGCC GATCTGCCGG CGGAGCTCGA AGTCGACGTC GACGAACTGA ACGCGGCGCT CGCGCTCGTG CACAGCTTCG ATCCGGCGGG CGTCGGCGCG CGGTCCGCGT CCGAATGCCT GAAGCTGCAG TTGCTGCGGC TGGATCCGTC CCCGACGCGC ACGCTCGCGC TCGATATCGT GTCGCAGCAT CTCGAACTGC TTGCCGCGCG CGATTTCACG CGCCTGCGCA AGCAACTGAA GGCGACCGAC GACGAGCTGC GCGACGCGCA CGCGCTGATC CGCTCGCTCG AGCCGTTTCC CGGCGCGGCG TACGGCAAGG CCGAAGCCGA TTACGTGGTG CCCGACATCA TCGTGAAGAA GGCCGGCCAG AGCTGGCAGG CGGAACTCAA TCCGGAAGTG GTGCCGAAGC TGCGTATCAA CCATCTTTAC GCGAACATCC TGCGCAACAG CCGGGGCGAT CCGAGCGCGG GATCGCTGAA GCAGCAGCTT CAGGAAGCGC GCTGGCTGAT CAAGAATATT CAGCAGCGGT TCGAGACGAT CCTGCGGGTC GCGCAGGCGA TTGTCGAACG TCAGAAGAAT TTCTTCGCGC ACGGCGAAAT TGCGATGCGC CCCTTGGTTT TGCGGGAAAT AGCTGATACG CTGGGCCTAC ACGAGTCGAC TGTCTCCCGT GTGACAACCG GCAAGTACAT GCTGACTCCG TTCGGCACAC TTGAATTTAA GTACTTCTTC GGGTCGCACG TATCGACAGA CACCGGAGGT GCCGCGTCGT CGACAGCGAT CCGCGCCCTC ATCAAACAAC TGATAGGAGC CGAAGACCCC AAATCCCCTC TTTCGGACAG TCGCATAGCC GAGCTGCTAG CGGAACAAGG GTTCGTGGTC GCGCGCCGCA CGGTTGCCAA ATATCGCGAA GCCCTCAAGA TCCCGGCGGT GAATCTGCGC AAGTCTCTGT AG
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Protein sequence | MANFRYDFPF AMKASLQLRL SQHLALTPQL QQSIRLLQLS TLELQQEVAT AIAQNPLLEN DDDWIASPLR VAADGSVIAQ TPASSSPEPM SGASNGTTAT NERTERDETA GVDEYDGYSA DGGDASQWNL DDFGRSPAAS DDDDLPPMQI HETSTSLRDH LMAQLRVTQA SPRDRALVTF LIESLDDDGY LSASLDEVLA DLPAELEVDV DELNAALALV HSFDPAGVGA RSASECLKLQ LLRLDPSPTR TLALDIVSQH LELLAARDFT RLRKQLKATD DELRDAHALI RSLEPFPGAA YGKAEADYVV PDIIVKKAGQ SWQAELNPEV VPKLRINHLY ANILRNSRGD PSAGSLKQQL QEARWLIKNI QQRFETILRV AQAIVERQKN FFAHGEIAMR PLVLREIADT LGLHESTVSR VTTGKYMLTP FGTLEFKYFF GSHVSTDTGG AASSTAIRAL IKQLIGAEDP KSPLSDSRIA ELLAEQGFVV ARRTVAKYRE ALKIPAVNLR KSL
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