Gene BTH_II2359 details

Gene Information

• Locus tag: BTH_II2359
• Symbol: shc
• ID: 3846364
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia thailandensis E264
• Kingdom: Bacteria
• Replicon accession: NC_007650
• Strand: -
• Start bp: 2896143
• End bp: 2898116
• Gene Length: 1974 bp
• Protein Length: 657 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 637839659
• Product: squalene-hopene cyclase
• Protein accession: YP_440546
• Protein GI: 83716953
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1657] Squalene cyclase
• TIGRFAM ID: [TIGR01507] squalene-hopene cyclase; [TIGR01787] squalene/oxidosqualene cyclases

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCACACGC TCGACGCAAC CGCTGCGCCC GCCGCGCCCA CCGTGGCGAC CGGCCTCGAC 
GCCGCCGTCG CGCGCGCGAC CGACGCGCTG CTCGCCGCGC AGAACGCGGA CGGCCACTGG 
GTCTACGAGC TCGAAGCCGA TTCGACGATT CCCGCCGAAT ACGTGCTGCT CGTCCACTAT 
CTCGGCGAGG CGCCGAACGT CGAGCTCGAA CGGAAGATCG CGCGCTATCT GCGCCGCATC 
CAGCTGCCGG ACGGCGGCTG GCCGCTCTTC ACCGACGGCG CGCCGAACAT CAGCGCGAGC 
GTGAAGGCGT ACTTCGCGCT GAAGGTGATC GGCGACGACG AGAACGCCGA GCACATGCAG 
CGCGCGCGCC GCGCGATCCA CGCGATGGGC GGCGCGGAAA TGTCGAACGT GTTCACGCGA 
ATCCAGCTCG CGCTGTACGG CGTCGTGCCG TGGTACGCGG TGCCGATGAT GCCGGTCGAG 
ATCATGCTGC TGCCGCAGTG GTTCCCGTTC CATCTGTCGA AAGTGTCGTA CTGGGCGCGC 
ACCGTGATCG TGCCGCTCCT CGTGCTGAAC GCGAAGCGCC CGGTCGCGAA GAATCCGCGC 
GGCGTGCGCA TCGACGAGCT GTTCAAGAGC GCGCCCGTCA ACACCGGTCT GCTGCCGAAG 
CAGCCGCACC AGAGCGCCGG CTGGTTTGCG TTCTTCCGCG CGGTGGACGG CGTGCTGCGC 
CTCACCGACG GCCTGTTCCC TCGCTATACG CGCGAGCGTG CGATCCGCCA GGCGGTTGCG 
TTCGTCGACG AGCGCCTGAA CGGCGAGGAC GGGCTCGGCG CGATCTATCC CGCCATGGCG 
AACGCGGTGA TGATGTACGC GGCGCTCGGC TATCCCGAGG ATCATCCGAA CCGCGCGATC 
GCGCGGCAGT CGATCGAGAA GCTGCTCGTC GTCGGCGAGG ACGAGGCGTA TTGCCAGCCG 
TGCCTGTCGC CGGTGTGGGA TACGTCGCTC GCCGCGCATG CGCTGCTCGA AACGGGCGAC 
GAGCGCGCGC GCGAAGCAGC CGTGCGCGGC CTCGACTGGC TCGTGCCGCG GCAGATCCTC 
GACGTGCGCG GCGACTGGAT CTCGCGCCGT CCGCACGTGC GCCCGGGCGG CTGGGCGTTC 
CAGTACGCGA ATGCGCACTA TCCGGACGTC GACGATACGG CGGTCGTCGC GATGGCGATG 
GATCGCGTCG CGAAGCTCGA TCGGACGGAC GCGTACCGCG AGTCGATCGC ACGCGCGCGC 
GAGTGGGTGG TCGGCATGCA GAGCAGCGAC GGCGGCTGGG GCGCGTTCGA GCCGGAAAAC 
ACGCAGTACT ACCTGAACAA CATCCCGTTC TCCGATCACG GCGCGCTGCT CGATCCGCCG 
ACGGCCGACG TGTCGGGCCG CTGCCTGTCG ATGCTCGCGC AGTTCGGCGA GACGAGCGCG 
TCGAGCGAGC CCGCGCGCCG CGCGCTCGAT TACATGCTGA AAGAGCAGGA GCCGGACGGC 
AGCTGGTATG GCCGCTGGGG GATGAACTAC ATCTACGGCA CGTGGACCGC GCTGTGCTCG 
TTGAACGCCG CCGGCCTCGG CCACGACGAT CCGCGCGTGA AGCGCGCCGC GCAGTGGCTG 
CTGTCGATCC AGAACCCCGA CGGCGGCTGG GGCGAGGACG GCGACAGCTA CAAGCTCGAC 
TACCGCGGCT ACGAGCGCGC GCCGAGCACG TCGTCGCAGA CCGCGTGGGC GCTGCTCGGC 
CTGATGGCGG CGGGCGAGGT CGATCATCCG GCCGTCGCGC GCGGCATCGA TCATCTGCTC 
GGCACGCAGC GCGAGCACGG CCTGTGGGAC GAGACGCGCT TTACCGCGAC GGGCTTCCCG 
CGCGTGTTCT ATCTGCGCTA TCACGGCTAC CGCAAGTTCT TCCCGCTGTG GGCGCTCGCC 
CGCTATCGCA ACCTGAAGCG CGCGAACGCG ACGCGCGTGA CGGTCGGGAT GTAA 

 

Protein sequence

MHTLDATAAP AAPTVATGLD AAVARATDAL LAAQNADGHW VYELEADSTI PAEYVLLVHY 
LGEAPNVELE RKIARYLRRI QLPDGGWPLF TDGAPNISAS VKAYFALKVI GDDENAEHMQ 
RARRAIHAMG GAEMSNVFTR IQLALYGVVP WYAVPMMPVE IMLLPQWFPF HLSKVSYWAR 
TVIVPLLVLN AKRPVAKNPR GVRIDELFKS APVNTGLLPK QPHQSAGWFA FFRAVDGVLR 
LTDGLFPRYT RERAIRQAVA FVDERLNGED GLGAIYPAMA NAVMMYAALG YPEDHPNRAI 
ARQSIEKLLV VGEDEAYCQP CLSPVWDTSL AAHALLETGD ERAREAAVRG LDWLVPRQIL 
DVRGDWISRR PHVRPGGWAF QYANAHYPDV DDTAVVAMAM DRVAKLDRTD AYRESIARAR 
EWVVGMQSSD GGWGAFEPEN TQYYLNNIPF SDHGALLDPP TADVSGRCLS MLAQFGETSA 
SSEPARRALD YMLKEQEPDG SWYGRWGMNY IYGTWTALCS LNAAGLGHDD PRVKRAAQWL 
LSIQNPDGGW GEDGDSYKLD YRGYERAPST SSQTAWALLG LMAAGEVDHP AVARGIDHLL 
GTQREHGLWD ETRFTATGFP RVFYLRYHGY RKFFPLWALA RYRNLKRANA TRVTVGM