| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_II2268 |
|---|
| Symbol | |
|---|
| ID | 3845112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007650 |
|---|
| Strand | + |
|---|
| Start bp | 2781243 |
|---|
| End bp | 2783282 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637839569 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_440456 |
|---|
| Protein GI | 83716099 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.144495 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCA AATCGCAACT TTTCCGGCCG GCGCGCTCGC GCGTCGTGCG CAACGCGGCG
CTCGCCGCCG CGTGCTGCGC CGGACTCTTC ACCGCCCTCG CCGCAGCCGC GCAGGACGCC
ATCGAGAATG CCGCGCTCGC GAAGAGCACG GCGGCCGCGC CGATGGCGAT CGGCCGCGGG
CCGATGCAGA TGACGATCAG CATGGCGCCC GTGCCCGCCG CCGGCGCAGC AGCCGCGGCG
GCGGCCGCCG CCGCGCCGCT GCGCGGTCCG AACTGCGTCG GCGCGATGGG CGAATCGACG
AGCGTGAGCG TGCCGCTCGG CAAATCGCTG CTCGTGCCGC TCGACGAGCC GGTGCGCAAC
CGCACGATCG GCAACCCGGC CGTCGCGCAG GCGACGATGG TGTCGCCGCG CACGCTCTAC
CTCGTCGGCA TGTCGGTCGG CACGACGAAC ATGATCGTCC AGGGCAAGAG CGGCGCGTGC
CGGATCATCG ACGTCGCGGT CGGCGCGGAC GCGGGCGGCC TGCAGGCGTC GCTGCGCCAG
CTGATGCCGC GCGAGCGCGA CATTCGCGTG TCGACCGCGG CGGACACGAT CGTGCTCGCG
GGCAACGTGT CGAGCGCGCA GGCCGCGCAG CAGGCGGTCG CGATCGCGAA GGCGTACAGC
GACCGCACGA ACGCCGGCGC GCTCGGCGGC GGCGGCGGCG GCACGCGCGC CGGCGTGCTA
AACATGCTGA CCGTCACGTC GCCGCAGCAG GTGATGCTCG AAGTGAAGGT CGCGGAGGTG
TCGAAGACGC TGATCAACCA GATGGGCTCG GCCGTCAATC TCCAGGGCGG CTTCGGCTCG
TGGACGGGCG CGCTCGTGAC GAGCCTCCTC ACGGGCGTCG GCAACGGCAT CGCGGTCAGC
AAGTCGAACA AGCTGCCGTT GAACGGCTCG ATCGACGCGC AGAACACCGA CCAGCCGGTG
AAGATCCTCG CCGAGCCGCG GCTCGTCACG ATCAGCGGCC AGGAAGCGAC GTTCCTCGCG
GGCGGCAAGA TCTTCATCCC CGTTCCGCAA AGCAGCGGCG TCGGCACGAG CACGATCACG
CTGCAGCAAG AGGAATTCGG CGTCGGGCTG AAGTTCACGC CGACCGTGCT GTCGAACGGC
CGCATCAACC TGAAGGTCGC GCCCGAGGTG TCGGAGCTGT CGCCGACGGG CGTCACGCTG
TCGGCGGCGA ACGTGGGCGG CGTGTCGATC CTGCCGCTCA TCACGACGCG GCGCGCATCG
ACGACCGTGC AGATGAACGA CGGCGAGACG TTCGCGATCG GCGGGCTCAT CAAGGACAAC
GCGCAGGGCA CGCTGAAGGC GCTGCCCGGC ATCGGCGAGC TGCCGGTGCT CGGCGCGCTG
TTCCGCAGCA CGTCGTTCCA GCAGGACCGC ACCGAGCTCG TGTTCATCAT CACGCCGCAT
CTGGTGAAGC CGCTCGCTGC CGCCGACGTG CCGCTGCCGA CCGACAGCTT CACGCAGCCG
AACGAAGCCG ACGTCTACGC GACGGGCAAC ATGGAAGGCC GCGGCGGACT GCGTCAGCAC
GGCGTGGCGC CGGGTGCCGC CGCTCCCGCG AACGCCGCTC CCGCGAACGC CGCGCCGACG
AACGCGGCCC CGGCCGGTGC CGCGCCGGCG GCTGTCGCGC CCGCCGCGCC GGCCGCAGCC
GCCGCGCCTG CGAAGGACGC GCCGGCGAGC CCCGCGCCCG AGCAGCATGC GCCGGCCGCC
GCGCAAACGT CCGCGCCCGC GCCGCAGCCG GCGGCGCCCC CGCGCGCGTC GGCGACCGTG
CAGGCGCCGC CGCCCGCGCT GCCGTCCGCG GTCGCGACCG CGCGGCGGCA AGGCTCGCGC
GCCGCCGCGC CGGAGCCCGC GCCCACGGCG GTCACCGCGT CGCCCGTGCC AGCCGCATCG
CCCGCGCCCG CCGCGCTCGC GGCACCGGCC GCGGCCGGCG CGACCGCGAA GCGCCAGGGC
GCGCAGCCGC AGCAACAACT CGCCAATGCA GGCGCGATCG CGCCCGCCGT CGATCGCTGA
|
|---|
| Protein sequence | MDTKSQLFRP ARSRVVRNAA LAAACCAGLF TALAAAAQDA IENAALAKST AAAPMAIGRG
PMQMTISMAP VPAAGAAAAA AAAAAPLRGP NCVGAMGEST SVSVPLGKSL LVPLDEPVRN
RTIGNPAVAQ ATMVSPRTLY LVGMSVGTTN MIVQGKSGAC RIIDVAVGAD AGGLQASLRQ
LMPRERDIRV STAADTIVLA GNVSSAQAAQ QAVAIAKAYS DRTNAGALGG GGGGTRAGVL
NMLTVTSPQQ VMLEVKVAEV SKTLINQMGS AVNLQGGFGS WTGALVTSLL TGVGNGIAVS
KSNKLPLNGS IDAQNTDQPV KILAEPRLVT ISGQEATFLA GGKIFIPVPQ SSGVGTSTIT
LQQEEFGVGL KFTPTVLSNG RINLKVAPEV SELSPTGVTL SAANVGGVSI LPLITTRRAS
TTVQMNDGET FAIGGLIKDN AQGTLKALPG IGELPVLGAL FRSTSFQQDR TELVFIITPH
LVKPLAAADV PLPTDSFTQP NEADVYATGN MEGRGGLRQH GVAPGAAAPA NAAPANAAPT
NAAPAGAAPA AVAPAAPAAA AAPAKDAPAS PAPEQHAPAA AQTSAPAPQP AAPPRASATV
QAPPPALPSA VATARRQGSR AAAPEPAPTA VTASPVPAAS PAPAALAAPA AAGATAKRQG
AQPQQQLANA GAIAPAVDR
|
|---|
| |