| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_II2135 |
|---|
| Symbol | |
|---|
| ID | 3844850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007650 |
|---|
| Strand | + |
|---|
| Start bp | 2622737 |
|---|
| End bp | 2624005 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637839436 |
|---|
| Product | porin |
|---|
| Protein accession | YP_440323 |
|---|
| Protein GI | 83717961 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.262884 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCAA TTGTCATATT CATTAAGCGC CCCGTCGATA CAGTGCGCTT CCGTTCCCCT
TCCAAACGCC TTAAAGAGCG CCGCGGAACC GCAAACATTC TTACTGCTCG GAGATTTGTC
TTGAACAAGA AACTGTTGAC CACCGCTATC CTCGCCGCAA CCGCAAGCGC GGCCCACGCA
CAAAGCAGCG TGACGCTGTA CGGCCTCATC GACGCCGGCG TCAGCTACGT GAACCACAGC
AAGAGCGCGA GCGGCAGCGA CAAGCTCTTC AAATACGACG ACGGCATCGC CCAGGGCAGC
CGTTGGGGCC TGCGCGGCGC CGAAGACCTC GGCGGCGGCC TGAAGGCGAT CTTCGTGCTC
GAAAACGGCT TCAACAGCGG CAACGGCACG ATCGGCCAGG GCGGCGCGAT CTTCGGCCGC
CAGGCCTATG TCGGCCTGTC GCACAAGGAC GCCGGCACGC TGACGTTCGG CCGCCAGTAC
TCGTTCTCGA CCGACATCCT CGGCTCGAAC TACTCGACGG GCGGCAACAC GGTCGCGGGC
AACTACGCGT ACCACGTGAA CGACATCGAC CAATTGACGT CGAGCCGCAT CAACAACGCC
GTGAAGTTCC AGAGCGCGAA CTACGCGGGC TTCACGTTCG GCGCGTTGTA CGGCTTCTCG
AACTCGACGT CGTTCGCGGG CGCACCGGCG ACGACGAACG GCACGACGAC GACGCCCGGT
TCGTCGCGCG CGTACAGCTT CGGCCTGAAC TACGCGAACG GCCCGATCGG CCTCGGCGCC
GCGTACACCG ACATCCGCTA TCCGGGCCAG GCAGCGCCGG CGTTCACGAC CAACATCGCG
AACCTGACGA TCAGCAACGT GCGCGACCTG CGCAGCTTCG GCGTCGGCGG CCGCTACATC
TGGGGCCCGG CAACCCTCTG GGCGCTGTGG ACGAACACGC GCCTCGAGCC GATCACGGGC
GGCAGCACGA CGTACAACGC GTACGAAGCG GGCGGCAAGT ACGCGTTCAC GCCGGCGTTG
TCGGCAGGCG TCGGCTACAC GTACTCGCGC GTGTCGGGTG CGAACTCGGG CCACTGGAAC
CAGGTCAACG GCGCGCTCGA CTACGCGCTC AGCAAGCGCA CCGACGTGTA CCTGCTCGCG
ATCTACCAGG AAGCGTCGGG CAACAACCTG CAGGCGCAGA TCGGCTCGAG CACGAGCTAC
TTCAACACGT CGGGCACGGG TTCGAAGAAC CAGTTCGCCG CGCGCGTCGG TATCCGCCAC
AAGTTCTGA
|
|---|
| Protein sequence | MTAIVIFIKR PVDTVRFRSP SKRLKERRGT ANILTARRFV LNKKLLTTAI LAATASAAHA
QSSVTLYGLI DAGVSYVNHS KSASGSDKLF KYDDGIAQGS RWGLRGAEDL GGGLKAIFVL
ENGFNSGNGT IGQGGAIFGR QAYVGLSHKD AGTLTFGRQY SFSTDILGSN YSTGGNTVAG
NYAYHVNDID QLTSSRINNA VKFQSANYAG FTFGALYGFS NSTSFAGAPA TTNGTTTTPG
SSRAYSFGLN YANGPIGLGA AYTDIRYPGQ AAPAFTTNIA NLTISNVRDL RSFGVGGRYI
WGPATLWALW TNTRLEPITG GSTTYNAYEA GGKYAFTPAL SAGVGYTYSR VSGANSGHWN
QVNGALDYAL SKRTDVYLLA IYQEASGNNL QAQIGSSTSY FNTSGTGSKN QFAARVGIRH
KF
|
|---|
| |