| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_II1291 |
|---|
| Symbol | |
|---|
| ID | 3845404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007650 |
|---|
| Strand | + |
|---|
| Start bp | 1539483 |
|---|
| End bp | 1540916 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637838593 |
|---|
| Product | HlyD family secretion protein |
|---|
| Protein accession | YP_439487 |
|---|
| Protein GI | 83716645 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.888104 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGA GCGATGTCAA GATGAATTGC AATCGAATAT TGCTTCGAAT TGACGCATCG
ATTCGCCCGG CACGCGCACG CACGGGCAAG GGCCGCGCCG CGGGGAATCG CCCGCCCGCG
ATCCGGACAT CGCGAGCGCG CGGCGCGGCG CGCCCATCGC ACGGCCGTGC GCGGCCGTGC
GCGTTCGTCC GGCGTCGGCG TGCCGGGCCG CGCCGAACGA CGGCATCGTC CGCGCAGGGC
GTCGCGCTGC GCCGCACCAT TGGGCACGCG CGCGCCCGCG CGAACCCGCT CGGCGCGGCG
AGAGACGCGA CGGCCCGCGT CGCGAGCGCG CCGCGCGGCG TTCGCGACGG CGCGCGCCGC
GCGTTGACCC GCTTCAAATA TCGGCGCGGC TGCGCACGTA AAGTGATCGC ATCGCTGCGT
CCCACGTCGC CCCGCGTTCC CACGATGCCG AACCCACGCC GCCTTCGCCT GACGCTGACC
GTCGCGCTCG CCGCCGCCGC GCTCGGCTTT GCCGCGCTGC GCTCGCCCGG GTGGTTCGGC
GCGCCGAAGC CGCCGCCGCG GATCGTCGTG TCGGGCAACA TCGAAGCGCA CGAAAGCGTG
CTGAGCTTCA CGCAAGTGCA GGCGCCGATC GTCTACCTGC CGTTCGACGA AGGCGCGCGC
GTCACGCGCG GCACCGTGCT CGCGCGCGTC GACGACCGCG TGTACCGGCG GCAGACCGAC
ATCGACCGCG CGAACGTCGA CGTGCAGACC GCGCAGGTCG AAGCGAACCG CAGCAACGTC
GCGGCGCTCG AGCACGGTGT GCTCAGCGAC CGCTTCGATC TCGACGAAAA GCGGCTCGAC
TTCGTGCGCG CCGATACGCT CGCGCGGCAA TCCGCGGTGT CGCAGCAATC GCGCGACCTC
GCGCAGACGG CCGCGCGCCA GTCCGCCGCG GCGCTCGCGC GCGACGAGGC GCTGCTTGCC
GCCGCGCGCA ACGACGTCGC GCTCGCCGTG GCGGGCGTCG CGGCCGCGCA GGCGAAGCGC
AAGCTCGACG AGGCGACGCT GTCGTACACC GAGCTCGCCG CGCCGTTCGA CGGCGTGATC
GCGGTGCGGC ATGCGGAGCT CGGCCAGCTC GCGGGGCCGG GCGTCGCGAT CTTCACGATC
GCCGAGCTCG ATCACGTCTG GCTGCGCGCC TACGTGAACG AGCCCGACGT CGGGCGCATC
CGGCTCGGCG AGCCCGCCGA CGTGCGCACC GACGCGTATC CGTCGGCCGT CTATCGCGGC
CGGATCAGCT TCGTGTCGCC GCAGGCCGAA TTCACGCCGA AGACGGTCGA GACGCACGAG
GAGCGGGTCA CGCAGGTCTA TCGGGTCCGC ATCGACATCG ACAACCCGAC GCACGAGCTG
TTGCCCGGCA TGCCGGCCGA TGCGACGATC GCCGCGCTCG CGAGCGGCCG ATGA
|
|---|
| Protein sequence | MTLSDVKMNC NRILLRIDAS IRPARARTGK GRAAGNRPPA IRTSRARGAA RPSHGRARPC
AFVRRRRAGP RRTTASSAQG VALRRTIGHA RARANPLGAA RDATARVASA PRGVRDGARR
ALTRFKYRRG CARKVIASLR PTSPRVPTMP NPRRLRLTLT VALAAAALGF AALRSPGWFG
APKPPPRIVV SGNIEAHESV LSFTQVQAPI VYLPFDEGAR VTRGTVLARV DDRVYRRQTD
IDRANVDVQT AQVEANRSNV AALEHGVLSD RFDLDEKRLD FVRADTLARQ SAVSQQSRDL
AQTAARQSAA ALARDEALLA AARNDVALAV AGVAAAQAKR KLDEATLSYT ELAAPFDGVI
AVRHAELGQL AGPGVAIFTI AELDHVWLRA YVNEPDVGRI RLGEPADVRT DAYPSAVYRG
RISFVSPQAE FTPKTVETHE ERVTQVYRVR IDIDNPTHEL LPGMPADATI AALASGR
|
|---|
| |