| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_II1127 |
|---|
| Symbol | |
|---|
| ID | 3845702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007650 |
|---|
| Strand | - |
|---|
| Start bp | 1309317 |
|---|
| End bp | 1311035 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637838430 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_439324 |
|---|
| Protein GI | 83718150 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00567617 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTCC GCGCGCGCCA TGCGCCGGCA TCCGCGCCGA ACCGCCGCGC CGGCTTCTCC
GCCGGCCTAA AGATTCGCGC GCCTCGGCCG ATAACGCGGG GGCCGCCGGT CACCGCGCCC
CCCAACCGCC GGCGCACGGC GCCGCTCGCC GGTGTCGATC CGCGCCCCGG CGCCGCCCCC
CCAACCCGCT ACAAGCCCCG CATCGTGATC GCCCGCATCC CGACCAGCCG CCTCGCCGCC
CTGACCGGCC GCCATCCGTG GATCGCCGGC ACGCTCGGCA TGCTGATGGC GCTCGGCGTG
TTGACGATCA GCCTCGTCAC GCTCCGCGCG GCGCGCAACC AGGCCATCGA GCATGCACAC
GAGATGTCGA GAAACATCGC GACGATTATC GTCAGCAACA TCGCGAGAAC GATCGATTCA
TCCGACCACT CGCTGCTCAC GCTGATCGCC GGCCTCGATC AGCCCGAGAT CCGGCGGCTC
GAGCGCGCAA CGCGCCACGA ACTGCTGTTC GATCGAACCG CCGCCGCGAA ATACGTGACC
GGCATGGGCG TGATGAGCGT TCACGGGCGT ATCGTCGACG GCTGTTGCAA CGCGTCGCGC
GCGGGCGTCT TCAGCGACCG CGACTATTTT CTCGTGCACC GGAACACGCG CGACGCGGGG
CTGTTCGTAT CGAAGCCCTA CCGGTCCAGA GCGCGCGACG GCGTCGAGTC GATCGCGCTG
AGCCGGCGCA TCAGCAAGGC CGACGGCTCG TTCGACGGCG TGGCCGTGGT CGCGATCGAC
GTCGCGTATT TCCGGCATCT GCTGTCGAAG CTGAACGTCG GGCCGAACGG CGTCAGCGCG
ATCGTCCATG TCGACGGCAC GCTCGTCGCG CGCAATCCCG GCCTGCCGCA CGCGGGGCCG
AGCATCGTCG TGAAATCGCC AACCTTCCCG CGAATGGTGA ACCACGACGC CGGCTTCTAC
GCGGCGCGCT CGTCGATCGA CGGCGTGCTG CGCCTCTACA CGTTCGAGCG CATCCCGGGC
ACGCCGCTGA TCGCGGTCGT CGCGCCCGCC CAGCAGGATG TGCTCGCGTC GTGGCATTCG
CTCGCGCTCG GCGTGGGCAT CTCGGCCGCG TGCGTGAGCG TCGCGTTTTC CGGCGTGGTG
TGGCTGCTCG CGTTCGCGCT GCGCGATCGC ACCGCCGCGC GAGACCGCTT GCTCGAACTG
TCGCGGACCG ATCCGCTCAC GGGCCTCGGG AACCGCCGCG CGCTCGACGA CGCGCTGCAA
AGCGAATGGG CGCGTCTGCA ACGCAATGAC AGTTGCCTGT CGATCCTCTT CATCGACGCG
GACCACTTCA AGCGCTACAA CGACGCGCAC GGCCACACGC AGGGCGATCT CGCGCTCAAG
CGGCTCGCCG CGTGCATCGC GCGGCACGCG GGCCGCTCGG GCGATCTGGC GGCGCGGTAC
GGCGGCGAGG AATTCGTCGC GATCCTGCCC GATGCCGACG AGGCCGCCGC GGCGAGGATC
GCCGCATCGA TTCGCGCGGG CATTCGCGAC GCGACGCGGG CCGGCGCGAC GCCGCCGATC
CCGCGCTTCA CCGTGAGCGT CGGATGCGCA ACCGCCCGGC GAGGCGCTCA TGCGTCGCTC
GATGCATTCG TCCGCGCGGC CGACGATGCG TTGTACCGGG CCAAGGCGGA CGGACGGGAC
CGCACCGTGG CGGCCGGCGC GCTCGCGTCG CCCGCATGA
|
|---|
| Protein sequence | MTVRARHAPA SAPNRRAGFS AGLKIRAPRP ITRGPPVTAP PNRRRTAPLA GVDPRPGAAP
PTRYKPRIVI ARIPTSRLAA LTGRHPWIAG TLGMLMALGV LTISLVTLRA ARNQAIEHAH
EMSRNIATII VSNIARTIDS SDHSLLTLIA GLDQPEIRRL ERATRHELLF DRTAAAKYVT
GMGVMSVHGR IVDGCCNASR AGVFSDRDYF LVHRNTRDAG LFVSKPYRSR ARDGVESIAL
SRRISKADGS FDGVAVVAID VAYFRHLLSK LNVGPNGVSA IVHVDGTLVA RNPGLPHAGP
SIVVKSPTFP RMVNHDAGFY AARSSIDGVL RLYTFERIPG TPLIAVVAPA QQDVLASWHS
LALGVGISAA CVSVAFSGVV WLLAFALRDR TAARDRLLEL SRTDPLTGLG NRRALDDALQ
SEWARLQRND SCLSILFIDA DHFKRYNDAH GHTQGDLALK RLAACIARHA GRSGDLAARY
GGEEFVAILP DADEAAAARI AASIRAGIRD ATRAGATPPI PRFTVSVGCA TARRGAHASL
DAFVRAADDA LYRAKADGRD RTVAAGALAS PA
|
|---|
| |