Gene BTH_II1109 details

Gene Information

• Locus tag: BTH_II1109
• ID: 3846537
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia thailandensis E264
• Kingdom: Bacteria
• Replicon accession: NC_007650
• Strand: -
• Start bp: 1288110
• End bp: 1290140
• Gene Length: 2031 bp
• Protein Length: 676 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 637838412
• Product: choline/carnitine/betaine transporter
• Protein accession: YP_439306
• Protein GI: 83717613
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.507446
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCTCAT CCCGATCCGC GCCGCGCACG ACGCTCAAGC CGCAAGTCGT CGTGCCGTCG 
CTCGCCGTGA TCGGCGCGCT CCTCGCCGTC TGCGCGCTGC TGCCGAACGA AGCGGGCGCC 
CTCTTCGGCG CCGGCCAGCA ATGGATCGTC GAGCGTTTCG ACTGGTTCTA CGTGCTCGCG 
ATCACGACCT TCCTGATCTT CATCGTGCTG ATCGCGGCGA GCCGCTTCGG CAACATCAAG 
CTCGGCCCCG ACGACGCCGA GCCGGAATTC AGCTTCGTGT CGTGGACCGC GATGCTGTTC 
GCGGCCGGCA TGGGCATCGG CCTCATGTAC TTCGGCGTCG GCGAGCCGAT CCAGCATTAC 
CTGAAGCCGC CCACCGCGCT GGGCGGCACG CCCGCCGCCG CGCGCGAGGC GATGCTGATG 
TCGTTCTTCC ACTGGGGCCT GCACGCGTGG GCGACGTATG GCGTGATGGG CCTCGTGCTC 
GCGTATTTCG GCTTTCGCTA CAACCTGCCG CTCACGCTGC GCTCGGGCCT CTATCCGGTG 
TTGCGCGAAG GCGTGAACGG CTGGATCGGG CACACGGTCG ACGCGTTCGC GCTCGTCGGC 
ACCGTGGCCG GAATCGCGGT GACGCTCGGC TACGGCGTGC TGCAGCTGAG CGCTGGCCTG 
CACACGATCG CCGGCTGGCA AACCGACAGC GACGCGTTCC GCATCGGCCT CGTCGCGGTG 
GTCGTCGCGC TCGCCGGGCT CTCCGCCGCG AGCGGGCTCG ACAAGGGCGT GCGCCGGCTG 
TCCGAGCTGA ACCTGATGCT CGCGTTCGCG CTGCTCGCGT TCGTCGTCGT CGCGGGGCCG 
ACGTCGTTCC TGCTGCGCGC GTTCGGCGAC AACGTCGGCG AATATCTGTC GAAGCTCGTG 
TCGCTGTCGT TTCGCACGTA CGCATACGAA GCGCCGAACG ACAAAGGCTG GTTCGGCGGC 
TGGACGCTGC TCTACTGGGC GTGGTGGGTG TCGTGGTCGC CGTTCGTCGG GATGTTCATC 
GCGCGGATCT CGCGCGGGCG CACGATCCGC GAGTTCGTGA TCGGCGTGCT GCTCGTGCCC 
ACCGCGTTCA ATCTCGTCTG GATGACCGCG TTCGGCAACA GCGCGATCTG GCTCGACACG 
CACGCGGCCG CGGGCGCGCT CGCGCAGACG GCGACCAACG TCGACGCGCT GCTGTTCCGC 
TTCTTCGATT ACCTGCCGCT CACGCAACTG CTGTCGGTCG CGGCGATCGT GCTGATCGCG 
GTGTTCTTCG TCACGTCGGC CGATTCGGGC GCGTTCGTGA TCGACGCGAT CGCGACGCGC 
GGCGCGCCGC ATTCGCCCGT GTGGCAGCGG CTCTTCTGGG CGGCCGTGCT CGGCGTGACG 
GCGTCGGTGC TGCTCGTCGC GGGCGGGCTG AAGGCGCTGC AGGCGCTCAC GCTCGTCGCC 
GCGCTGCCCG TCGCGCTCGT GATGCTCGCG CTCTGCTATG GGCTCTGGCG CGGCCTGAAG 
GCCGACCACG CGCACTACTC GCAGGAGATG GCGCCCGCGA CCAGCTTCTG GACCGGCCAG 
CACTGGCGCC AGCGCCTGTC GCAGATCCTG CGCCACACGA CGGGCGCCGA CGCGCGGCGG 
TTCATCGCGC AGACGGTCGA GCCCGCGCTG CGCAAGGTCG CCGAAGAACT GAAGGCAGGC 
GGCGTCGACG CGCACGTCGC GCGCGACGAC GACGATGCGG TGCGCCTCAC GGTGCCCGCG 
CCCGCACAGC GCGATTTCGT CTACGGCGCA CGGGTGTCGC GCAAGTCGGC GCCCGCGTTC 
CGTATCCGCG AGGCGGCGGA ACCCGAGCCG CAGCGCGAGC ACGTGTGCGA GGTGCTGACG 
TTCTTCGCGG ACGGGCGGCT CGGCTACGAC ATCGAGTATC TGCGCGGCGA CGAGATCATC 
GCCGACGTGC TGCGGCAATA CGAGCGCTAC GTGTCGCTCG CGTCGGACAC GCGCACGCAT 
CTGCTGAACC GCGCGCCCGA GCATGCCGGG CCGGACGGGC TGACACAGTA A 

 

Protein sequence

MPSSRSAPRT TLKPQVVVPS LAVIGALLAV CALLPNEAGA LFGAGQQWIV ERFDWFYVLA 
ITTFLIFIVL IAASRFGNIK LGPDDAEPEF SFVSWTAMLF AAGMGIGLMY FGVGEPIQHY 
LKPPTALGGT PAAAREAMLM SFFHWGLHAW ATYGVMGLVL AYFGFRYNLP LTLRSGLYPV 
LREGVNGWIG HTVDAFALVG TVAGIAVTLG YGVLQLSAGL HTIAGWQTDS DAFRIGLVAV 
VVALAGLSAA SGLDKGVRRL SELNLMLAFA LLAFVVVAGP TSFLLRAFGD NVGEYLSKLV 
SLSFRTYAYE APNDKGWFGG WTLLYWAWWV SWSPFVGMFI ARISRGRTIR EFVIGVLLVP 
TAFNLVWMTA FGNSAIWLDT HAAAGALAQT ATNVDALLFR FFDYLPLTQL LSVAAIVLIA 
VFFVTSADSG AFVIDAIATR GAPHSPVWQR LFWAAVLGVT ASVLLVAGGL KALQALTLVA 
ALPVALVMLA LCYGLWRGLK ADHAHYSQEM APATSFWTGQ HWRQRLSQIL RHTTGADARR 
FIAQTVEPAL RKVAEELKAG GVDAHVARDD DDAVRLTVPA PAQRDFVYGA RVSRKSAPAF 
RIREAAEPEP QREHVCEVLT FFADGRLGYD IEYLRGDEII ADVLRQYERY VSLASDTRTH 
LLNRAPEHAG PDGLTQ