| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_II1080 |
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| Symbol | |
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| ID | 3846528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia thailandensis E264 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007650 |
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| Strand | + |
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| Start bp | 1257179 |
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| End bp | 1258840 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 637838383 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_439277 |
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| Protein GI | 83717604 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.10212 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCGCGC GGGCGCGGCG GCGCGCGAGC CGGTGCGGCA GGAATGAACG GAACGGGCCG
CGGCGGGATA CCGGAAAGCA AGAAGGACGC ATCATACGAA TGACGCAGAC AGCAACGCAA
GCAGCCACTC GCGCGATGAT CGCGACAGGA AGCCGCGCGG CGCGCCGGCT CGCGGCAGCC
GCGCTCGCGT GGGCGCTCGC CGGCTGCGTG CCGTCGGGCT TCGAGCCGGC GCTCGCGCCG
CGCACGCCGG GCGACGACGC GCTCGCGCAC ACGGCGGGGG GCGCCGCGCA CGGCGCATGG
CCGAGCCCCG ACTGGGTCCG GCAGCTCGGC GATCCGCAAC TCGACGCGCT CGTCGACGAG
GCGCTGCGGC AGAACCCGAC GCTGCAGGCC GCGCAGGCGC GCATCGGCGT CGCGCAGTCG
CAGCTGCAGC AGTTCGAATC GCTGACGGGG CTCACCGCGA CGGCGGGCGC GTCGCTCTCC
AAGGCGCACG TGCCGCGCTC GGGCGGCACC ATCAATACGA CGTTCAACGG CTTGCCGGTG
TCGGTGCCGC TCGTCGGCGA ATCGGTGGTG TCGTCGTCGT CGCTGTTCGT CGGGCTGAAC
TATCAGCTGG ACCTGTGGGG CAAGAACGCG GCGGCCACGC GCGGGCTGCT GTCGATGCGC
GATGCGGCGC GCGTGGAGGC CGAGCAGGCG CGGCTCGCGC TGTCGGTGGC GATCGTGACG
CTGTACGGCG AGCTGGACCG CGCGTATGCG CTGCGCGAGC TGCTGCAGCA GAAGCGCCGC
GCGAGCGAGC AGGTGGAGAC GGTGCTGCGC GAGCGCGCGG CGCGCGGGAT CGACAACGGC
TACGATGCGG ACGACGCGGC GCTCAAGCGG GGCAAGCTGC TCGAGCAGCT CGCGCTGACC
GACGAGCAGA TCCAGTTGCA GAAGCTGCAA CTGGGGGTGC TGAGCGGGCG GGGGCCGGAG
CGCGGGCTGT CGCTCGCGCG GCCGAAGCTC GCGCCGCTCG CGGACGCGCC GCTGCCGGCG
CGGCTGCCGG CCGGGCTGCT GGGGCGGCGG CCGGACATCG TCGCGGCGCG GCTGCGGGTG
GAGGCGGCGT ACGCGGCGAT CGACGGCACG CGCGCGTCGT TCTACCCGGA CGTGAACCTG
GCGGCGCTGG GCGGGCTGTT CGCGCTCACG CCGGCGTCGC TGTTCAAGCA CGATGCGCTG
GGGGGCTCGA TCGGTCCGGC GCTGTCGCTG CCGATCTTCG ATCGCGGCCG GCTGAAGGCG
AAGCTGGGGG GCGACGTGGC GAACGCGGAC GTGGCGCTGG CGCTGTACAA CCAGACGGTG
GATGCGGCGC TGGGCGAGGT GGCGCGGCAG TTGACGTCGC TGTCGACGGT GGATGCGCTG
CTCGAGGCGC AGCAGCAGGC GGTGCGCTCG GCGCAGCGGA TGGTGGCGCT GGCGCAGGAC
CGGCACCGGC GGGGGATGGG GATGCGCAAG GACGTGAACG TGGCGAAGCT GACGCTGCTG
GACGAGCGTG CGCACGTGAT CGAGCTGCAG GCGCGGCGGC GGACGCTGCG GGTGGGGCTG
ATCGGGGCGC TGGGCGGCGG CTTCGACGCG CGGCCGGCGG GCGGCGCGCC GCTCGCGCAG
GGCAAGCCGT TCGCGGCGGC GAGCGACAGG CCGCCCGATT GA
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| Protein sequence | MRARARRRAS RCGRNERNGP RRDTGKQEGR IIRMTQTATQ AATRAMIATG SRAARRLAAA
ALAWALAGCV PSGFEPALAP RTPGDDALAH TAGGAAHGAW PSPDWVRQLG DPQLDALVDE
ALRQNPTLQA AQARIGVAQS QLQQFESLTG LTATAGASLS KAHVPRSGGT INTTFNGLPV
SVPLVGESVV SSSSLFVGLN YQLDLWGKNA AATRGLLSMR DAARVEAEQA RLALSVAIVT
LYGELDRAYA LRELLQQKRR ASEQVETVLR ERAARGIDNG YDADDAALKR GKLLEQLALT
DEQIQLQKLQ LGVLSGRGPE RGLSLARPKL APLADAPLPA RLPAGLLGRR PDIVAARLRV
EAAYAAIDGT RASFYPDVNL AALGGLFALT PASLFKHDAL GGSIGPALSL PIFDRGRLKA
KLGGDVANAD VALALYNQTV DAALGEVARQ LTSLSTVDAL LEAQQQAVRS AQRMVALAQD
RHRRGMGMRK DVNVAKLTLL DERAHVIELQ ARRRTLRVGL IGALGGGFDA RPAGGAPLAQ
GKPFAAASDR PPD
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