| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_II0621 |
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| Symbol | |
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| ID | 3845284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia thailandensis E264 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007650 |
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| Strand | + |
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| Start bp | 725844 |
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| End bp | 728246 |
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| Gene Length | 2403 bp |
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| Protein Length | 800 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637837926 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_438821 |
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| Protein GI | 83716798 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAGA CTACCGGCGG AAAAAAAGCG GCGGGCAAGG CGACTGAATC GACCATGAAG
GTCGCGCCGG CCCGATCCGC GGCTTCCGCA AAGACGTCTT CGGCCCGCGC GGCGCATCCT
GCGAGGAAGA GAGCCGCGGC CGGCACCGCC AAGGCTGCGC CGGCGCCGAC GGCCAGCGCA
TCACGGGTCG TCGTGAGGTC CGAGGCGAAG ACGGCGAAGC CGGCTTTGAA GCGGGCGAGT
GCGAAAAGCG CAAGGGGAGC GGCTGCCGCG CCGGACGAAA CGGCAGCTAC TCGAGCATCC
ACGGTTCAAC CGGCTGTAGT CCAGCAGCCG CGAGTCGATT TAGCCGGTAC GGCGAACTCC
ATGACGAAAA AGCTGAACGA AGTATCCGTC GATGACGACG CAAACCAGAG CGACGAACAG
CCTACCGCTG CGTCGGGCAA AGGCGAAAAG GCCAAGGCGC GCGATCGCCG CGCCAAGGAA
AAGGCGCTGC TGAAGGAAGC GTTCGCGACG AGCACGCCCG GCACGGCCGA GGAGCTCGAA
GAGCGCCGTA CGAAGCTGCG CGCGCTGATC AAGCTCGGCA AGGAGCGTGG CTTCCTCACG
TACGCCGAAA TCAACGACCA TCTGCCGGAC AACTTCACGG AAACGGAAGC GCTCGAAGGC
ATCATCGGCA CGTTCAACGA CATGGGCGTC GCGGTGTACG AGCAGGCGCC CGACGCCGAG
ACGCTGCTGT TGAACGACAA CGCGCCCGCC GCGTCGTCCG ACGATGAAGT CGAAGAGGAA
GCGGAAGTCG CGCTGTCGAC CGTCGATTCC GAATTCGGCC GCACGACCGA TCCGGTCCGG
ATGTACATGC GCGAGATGGG CACGGTCGAG CTGCTCACGC GCGAGGGCGA AATCGAGATC
GCGAAGCGGA TCGAGGACGG CCTGCGCCAC ATGGTGATGG CGATTTCCGC GTGCCCGACG
ACGATCGCCG ACATCCTCGC GATGGCCGAG CGCGTCGCGA ACGAGGAGAT TCGCGTCGAC
GAGCTCGTCG ACGGCCTGAT CGATCCGAAC GCCGCCGATA CCGACGGCTT CTCGGAGAAG
GACGCCGAGG AAATCGAGAA CGAGGACGAG GAAGCCGAAG AGGACGACGA AGAGGAAGAA
GAGGACGACG ACGGCGCCGC GCAAGCGACC GCCAATGCGG CTCAGCTCGA AGCGCTGAAG
CGCGCGTCGC TCGAGAAGTT CGCGCTGATC AGCGAATGGT TCGACAAGAT GCGCCGCGCG
TTCGAGAAGG AAGGCTACAA GTCGAAGTCG TACCTGAAGG CGCAGGAAAC GATCCAGAAC
GAGCTGATGT CGATCCGCTT CACCGCGCGC ACCGTCGAGC GTCTGTGCGA CACGTTGCGC
GCGCAGGTCG ACGAAGTGCG TCAGGTCGAG CGTCAGATTC TGCACATCGT CGTCGACAAG
TGCGGGATGC CGCGCTCGGA ATTCATCGCG CGCTTCCCGG GCAGCGAGAC CGATCTCGAC
TGGGCAGAGA AGGTCGCGGC CGAAGGCCAT TCGTACGGCG CGATCCTGTC GCGCAACATC
CCGGCGATCC GCGAGCAGCA GCAGCGTCTG CTCGACTTGC AGGCGCGCGT CGTGCTGCCG
CTGAAGGACC TGAAGGAAAC CAACCGCCAG ATGGCGGCGG GCGAACTGAA GGCGCGCCAG
GCGAAGCGCG AGATGACCGA GGCGAACCTG CGTCTCGTGA TCTCGATCGC GAAGAAGTAC
ACGAACCGCG GCCTGCAGTT CCTCGATCTG ATCCAGGAAG GCAACATCGG CCTGATGAAG
GCCGTGGACA AGTTCGAATA CCGTCGTGGC TACAAATTCT CGACCTACGC GACGTGGTGG
ATCCGCCAGG CCATCACGCG CTCGATCGCG GACCAGGCGC GCACGATCCG TATTCCGGTT
CACATGATCG AGACGATCAA CAAGATGAAC CGCATCTCGC GGCAGATCCT GCAGGAAACC
GGCCTCGAGC CGGACCCGGC TACGCTTGCC GAGAAGATGG AGATGCCGGA AGACAAGATC
CGCAAGATCA TGAAGATCGC GAAGGAGCCG ATCTCGATGG AAACGCCGAT CGGCGACGAC
GACGATTCCC ATCTCGGCGA CTTCATCGAG GACACCAACA CGGTCGCGCC GGCGGATGCC
GCGCTGCATG CGAGCATGCG CGACGTCGTG AAGGACGTGC TCGATTCGCT GACGCCGCGC
GAGGCGAAGG TGCTGCGGAT GCGCTTTGGT ATCGAAATGA GCACCGATCA CACGCTCGAG
GAAGTCGGCA AGCAGTTCGA CGTCACCCGC GAGCGGATTC GTCAGATCGA GGCGAAGGCG
CTGCGCAAGC TGCGTCATCC TAGCCGTTCG GACAAGCTGA AGTCGTTCCT CGAGGGGAAC
TGA
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| Protein sequence | MAKTTGGKKA AGKATESTMK VAPARSAASA KTSSARAAHP ARKRAAAGTA KAAPAPTASA
SRVVVRSEAK TAKPALKRAS AKSARGAAAA PDETAATRAS TVQPAVVQQP RVDLAGTANS
MTKKLNEVSV DDDANQSDEQ PTAASGKGEK AKARDRRAKE KALLKEAFAT STPGTAEELE
ERRTKLRALI KLGKERGFLT YAEINDHLPD NFTETEALEG IIGTFNDMGV AVYEQAPDAE
TLLLNDNAPA ASSDDEVEEE AEVALSTVDS EFGRTTDPVR MYMREMGTVE LLTREGEIEI
AKRIEDGLRH MVMAISACPT TIADILAMAE RVANEEIRVD ELVDGLIDPN AADTDGFSEK
DAEEIENEDE EAEEDDEEEE EDDDGAAQAT ANAAQLEALK RASLEKFALI SEWFDKMRRA
FEKEGYKSKS YLKAQETIQN ELMSIRFTAR TVERLCDTLR AQVDEVRQVE RQILHIVVDK
CGMPRSEFIA RFPGSETDLD WAEKVAAEGH SYGAILSRNI PAIREQQQRL LDLQARVVLP
LKDLKETNRQ MAAGELKARQ AKREMTEANL RLVISIAKKY TNRGLQFLDL IQEGNIGLMK
AVDKFEYRRG YKFSTYATWW IRQAITRSIA DQARTIRIPV HMIETINKMN RISRQILQET
GLEPDPATLA EKMEMPEDKI RKIMKIAKEP ISMETPIGDD DDSHLGDFIE DTNTVAPADA
ALHASMRDVV KDVLDSLTPR EAKVLRMRFG IEMSTDHTLE EVGKQFDVTR ERIRQIEAKA
LRKLRHPSRS DKLKSFLEGN
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