| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3624 |
|---|
| Symbol | trmE |
|---|
| ID | 3837080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 4163345 |
|---|
| End bp | 4164712 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637827748 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | YP_428705 |
|---|
| Protein GI | 83594953 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.473452 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTCG ATACCATTTT TGCCCCCGCC ACCGCCCGTG GTCGGGCGGG GGTCGCGATC
GTTCGCTTGT CCGGACCCCG GGCCGCAACC GCCCTGACGC TTTTGGCCGG CCGGCTGCCC
GAAGCCCGCC GGGCGACCCG CGCGGCGCTG CGCTCCCCCC CCAGCGGCCC AGGGCCCACC
GGCCCGGGGC CGGAGGAGGG GGGCGAGGTT CTTGATGACG CCCTGGTGCT GTGGTTTCCG
GCGCCGGCCA GCTTCACCGG CGAGGATGTG GCCGAGCTTC ATATCCATGG CGGGCGGGCG
GTTCTTGCCG CGGTGCTGGG GGCCTTGGGC GATCTGCCCG GCCTGCGTCC GGCCGAGGCC
GGCGAGTTTT CGCGGCGGGC TTTCCTCAAT GGCCGGCTTG ATCTGACGGC GGCCGAGGCC
CTGGCCGATC TGGTCGATGC CGAGACCCAG GCCCAGCGCC GTCAGGCCCT GCGCCAAGCC
GATGGCGCCC TGGTCCGGCT CTATGAGGGC TGGCGGAAGA CCGGCATCGG CCTGCTTGCC
CATCTTGAAG CGGTGCTTGA TTTCCCCGAT GAGGACCTGC CGCCCGAAGT GGAAACGGCG
GTGCGCGGGG GCATCGGCGC CCTGGCCGAC GCCCTGGCCG GTCATCTCGA TGACCGTCAC
CGGGGCGAGC GCCTGCGCGA CGGTCTGCAG GTCGCGGTGG TCGGCGCCCC CAATGTCGGC
AAGTCCAGTC TGGTCAATCG GCTGGCCCGG CGCGAGGCGG CGATCGTCTC CGATATCGCC
GGCACCACCC GCGATATCGT CGAGGTCGCC CTCGATCTGG GTGGCTATCC GCTGGTGGTC
GCCGATACCG CCGGTTTGCG CGAGACCAGC GACGGCATCG AGGCCGAAGG CGTGCGCCGG
GCCCGGGCCC GGCTGGCCGC CGCCGATCTG ACCCTGGCGG TCAGCGATGG CACGGTGGAA
AACGGGGCCG ATGATCCGGC CGCCGATTTG ACCGGAGAAG CGGTTTTGCG GGTGGTGACC
AAGCGCGATC TACTCGATCC GCGCGCCGTC GAGCGCTGGC TGGCCCGGGG TGCCCTGCCG
GTTTCGACGC TAACCGGCGA GGGGCTGGAC GCTTTGGAGG CGGCCCTGGA AAGCCGGGCC
CGGGCTTTTT TCGAGGGCGA TGGCACCCCG GCCCTGACCC GCCAGCGCCA CCGCTCGGCC
CTGATGGAGG CGCGCGCCGC GCTGCGGCGG GCGGCCGAAG CGCCTCTGGC CGAACTGGTG
GCCGAGGACC TGCGCCTCGC CCTGCGCGCC ATCGGCCGCA TCACCGGACG GGTGACGGTG
GATGACGTTC TTGATGTCAT CTTCCGCGAT TTCTGCATCG GCAAATAA
|
|---|
| Protein sequence | MTVDTIFAPA TARGRAGVAI VRLSGPRAAT ALTLLAGRLP EARRATRAAL RSPPSGPGPT
GPGPEEGGEV LDDALVLWFP APASFTGEDV AELHIHGGRA VLAAVLGALG DLPGLRPAEA
GEFSRRAFLN GRLDLTAAEA LADLVDAETQ AQRRQALRQA DGALVRLYEG WRKTGIGLLA
HLEAVLDFPD EDLPPEVETA VRGGIGALAD ALAGHLDDRH RGERLRDGLQ VAVVGAPNVG
KSSLVNRLAR REAAIVSDIA GTTRDIVEVA LDLGGYPLVV ADTAGLRETS DGIEAEGVRR
ARARLAAADL TLAVSDGTVE NGADDPAADL TGEAVLRVVT KRDLLDPRAV ERWLARGALP
VSTLTGEGLD ALEAALESRA RAFFEGDGTP ALTRQRHRSA LMEARAALRR AAEAPLAELV
AEDLRLALRA IGRITGRVTV DDVLDVIFRD FCIGK
|
|---|
| |