| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3560 |
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| Symbol | |
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| ID | 3837015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 4099471 |
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| End bp | 4102326 |
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| Gene Length | 2856 bp |
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| Protein Length | 951 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637827683 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_428641 |
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| Protein GI | 83594889 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTCTG GTGTCGCCCC CTTGCCCGGT ATCGTCAGTA CTTTGTCGGC GGCGGCGGAA
GCCGTATCCG AAGCCTTGAT CGCCCTTGAT GCCGACGGCG GAATCCTGGT GGTTAACGGC
GCCGCCGAGC GGGTGTTTGA CCGGCGGCGC GACGATCTGA TCGGCCGCTC GCTCGACGTG
GTTTTCGGCG GGGATTTCGC CGAGGCGATG GCGTCAAACC TCTCGGCAAA GGTCGACGCC
CTGCCCCCCG CCCCCGGCGG CGGACGGCTG CTTCGCCGGC CCGGACTCCC TCCCCTTGCC
CTCCATGCCG GATTCTCCGT CACCGGCGAC CATGGGCGGC CTTTGGCGAC GATCGTCATC
CGCGATCTGT CGCCCAGGGC GGACAGTTGG CTGGAGACCG AGGAACGCCT GGGGGGCTTC
GCCGCCAGCA TGCCCGGGAT CATTTTCCAG CGGGTGGCCC ATCGCGATGG GTCGTTGTCC
TATCCCTTCC TGTCGAGCGG CGTTCATGCC GTTCTTGGTT ACCACCCCGC GGAGATGAGC
GTGGCCCTTG ATGGCTGTCT GAACGCCATC CATTGGGCCG ATCGCGAAAG CTATCTGCGC
CGACTGCGCC AGTCGGCGCA AACCCTGGCC ATCTGTTCGG AGGAATTCCG CGCCATTACC
CGTGAGGGCG CCGTGAAATG GTTGTCGGGC GCCTCCCAAC CGCGGGCGAT GGCCAATGGC
GACATCCTGT GGGACGGCGT GCTGGTCGAT GTCACCGAAC GCAAACGGGC CGAACTGTGG
CTTGAAATGA TCATGGATCG TGCCGCCGAC GGCATCGTCA CCATCAACGA GCAGGGGGTG
ATCGAATCGG CCAATGCCGC CGTCGGCACG TTTTTCGGCT ATGCCGATCG CGGCGAGTTG
ATCGGGCGGC GGGTTGAAAT CCTGATGGCC GAGGCCGATC GGCGCCAGCA TACCAGACAT
ATGCTGCGCT ATAGGGAGAC CGGCGACGGC GCCCTGATCG GCGCCGGACC CCGCGAATTG
ACCGGTCGCC GCCGGGATGG CACCACCTTC GCCCTGGAAC TGGCGCTGTC CGAGGTGCGC
ACCGAGGGGC GGCGGATCTT CATCGCCGTC ATCCGCGACA TCACCCAGCG CAAGGAGACC
GAGGGGGCCC TGGCCGCCAC CCGCGCCCGG CTGCAAACCA TCGCCGATAA TGTGCCCGGG
CTGGTCTTCC AGCGCGAATT GACCGCCGAA GGCGTCTTGC GCTTTTTGTT CGTCAGCAAC
GGCGTGCACG AGGTTCTGGG GATAACCCCC GAGGCCCTTC TCGCCGATGG CGAGTTGTTC
CTCGGCGCCA TGGATCCCGA TGTTCGCGCC GCGTTCCGCG AAACTCTGCG CCAGTCGGCC
AGTCGGCTTG AACCGATGGA AGAGGATATC AAGCTGCGCG GCCGCGACGG CGAGGAACGC
TGGTTGCGCG GTTGGTCGCG GCCCTCGCGG CGCGAAGACG GCTCGGTGGT GTGGGACGGG
GTGACGCTTG ATGTCACCGA CCGCAAGCGC GCCGAGGACA AGCTGACCTT CCTCGCCTAT
TACGATCCGC TGACCGGCCT GGGCAATCGC TCCTTGTTTA TCGATCGCTT CGATCGCGCC
CGCCGCTTCG CCGAAAGCAT CCAGGCCTGG GTGGCGGTGC TGTCGATCGG CCTTGATCGC
TTCGGCATGG TCAACGCCAC CATCGGCCAT ACCATGGGCG ACAAGGTGCT GATCGCCGTG
ACCCGCCGGC TTCAGCAAAG CCTGGAGGCC GGGTCGATCG TCTGTCGGGC CGGGGGGGAC
CGTTTTCTGG TGCTGCTCAC CGGGCTGACC GATCGGGCCG ATTTGCGCGA GGTGGTGGCG
ACGATCCAGG ATGCCTTCGT GCCGCCGATC GAGGTCGAGG GCCAGCAGTT CGATATCGGC
CTGACCATCG GCGGCGCCCT CCACCCCGAG GACGGGCGCG AGGCGGAAAC CTTGATCATG
CACGCCGATG CCGCCCTGCA CCGGGCCAAG GGCGGCGGCG GCGCCTTCCA GATGTTCACC
CCTGAAATGG GGGCGCGGGC GGCCCATTTG CTGACGATTC AGCACAAGCT GCGCCGGGGG
CTGGAGCGCC ATGAGTTCGT CGCTTATTTC CAGCCCCAAG TCGACCTGCG CAGCGGCCTG
ATCACCGGCT GCGAGGCGCT GGCCCGCTGG AACAGTCCCG AGGACGGTCT GGTGCCACCG
GGCAAGTTCA TTGGCGTGGC CGAGGAATAC GGCCTGATCG ACGCCATCTG TGGGCAGGTG
CTTGATGACT CCTGCCGCTG GTTATCGACG TGGCGGGCGC GCGGACTGCC CCAGGTTCCG
GTCGCCGTCA ACATCTCCGG CCGCCAGTTC CAGAACGCCC GCCAGCTTGT CGCCATGGTC
GATCAGGCCT TGCGCCAAAG CGGCGTCGAT CCGCGCCTGC TTGAACTGGA ACTGACCGAA
AGCTCGGCGA TGAGCGATCC GGAAAACGCC ATCGCCGTGG TCAATCTGCT GCGCGAGCGC
GGCGTCTCCT GCGCCATCGA TGATTTCGGC ACCGGCTATT CCTCGCTTTC GGTGCTCAAG
CGCTTTCCCA TCGGCAAGCT CAAGATCGAC CGCAGCTTCG TCATGGATGT CACCACCGAC
CCCAACGATG CCGCCATCGT CCAGGCGATC ATCGCCATGG CCCATGCCCT GAACCTGCGG
GTGGTCGCCG AAGGGGTGGA AACCCTCGAT CATCTGGCCT TCCTGCGCGA GGTTCACTGC
GACGCGGTTC AGGGCTTCTT GTTCGCCAGG CCCCTGCCCG GCGAGGATAT GGCCCTGATG
CTGGCCGGCG GCCCTCCCCA GCCCAATCCC CGTTGA
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| Protein sequence | MTSGVAPLPG IVSTLSAAAE AVSEALIALD ADGGILVVNG AAERVFDRRR DDLIGRSLDV
VFGGDFAEAM ASNLSAKVDA LPPAPGGGRL LRRPGLPPLA LHAGFSVTGD HGRPLATIVI
RDLSPRADSW LETEERLGGF AASMPGIIFQ RVAHRDGSLS YPFLSSGVHA VLGYHPAEMS
VALDGCLNAI HWADRESYLR RLRQSAQTLA ICSEEFRAIT REGAVKWLSG ASQPRAMANG
DILWDGVLVD VTERKRAELW LEMIMDRAAD GIVTINEQGV IESANAAVGT FFGYADRGEL
IGRRVEILMA EADRRQHTRH MLRYRETGDG ALIGAGPREL TGRRRDGTTF ALELALSEVR
TEGRRIFIAV IRDITQRKET EGALAATRAR LQTIADNVPG LVFQRELTAE GVLRFLFVSN
GVHEVLGITP EALLADGELF LGAMDPDVRA AFRETLRQSA SRLEPMEEDI KLRGRDGEER
WLRGWSRPSR REDGSVVWDG VTLDVTDRKR AEDKLTFLAY YDPLTGLGNR SLFIDRFDRA
RRFAESIQAW VAVLSIGLDR FGMVNATIGH TMGDKVLIAV TRRLQQSLEA GSIVCRAGGD
RFLVLLTGLT DRADLREVVA TIQDAFVPPI EVEGQQFDIG LTIGGALHPE DGREAETLIM
HADAALHRAK GGGGAFQMFT PEMGARAAHL LTIQHKLRRG LERHEFVAYF QPQVDLRSGL
ITGCEALARW NSPEDGLVPP GKFIGVAEEY GLIDAICGQV LDDSCRWLST WRARGLPQVP
VAVNISGRQF QNARQLVAMV DQALRQSGVD PRLLELELTE SSAMSDPENA IAVVNLLRER
GVSCAIDDFG TGYSSLSVLK RFPIGKLKID RSFVMDVTTD PNDAAIVQAI IAMAHALNLR
VVAEGVETLD HLAFLREVHC DAVQGFLFAR PLPGEDMALM LAGGPPQPNP R
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