| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3506 |
|---|
| Symbol | |
|---|
| ID | 3836960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 4033225 |
|---|
| End bp | 4034451 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637827628 |
|---|
| Product | putative branched-chain amino acid transport system substrate-binding protein |
|---|
| Protein accession | YP_428587 |
|---|
| Protein GI | 83594835 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACGG TGCTAAGCGC GACCCTGGCC GGCGCCTTGC TGGCGATGCT CTCCCCCTTT
GGCGGGGCCC AGGCCGACGA CAGCGTGTTC GTTGGCCATC TCAAGGATGT GACCGGAGCC
ACCGGCTTTG TCGGCAAGCT CTATGGCGAG GGGGTCAACG ACGCCCTTGT CTGGATCAAC
GCCCATGGCG GCATCGACGG CACCCGGCTT GATTTCGAAT CGGTCGATTA CGCCTATGAG
GTGCCGCGCG CCATCGCCCT TTACAAGAAA TGGACCAGCC AGAACAAGAT GGTCGCCCTG
CAGGGCTGGG GTACGGGCGA TACGGAGGCG CTGATCAGTT TCGTCGCCAA GGACAAGATC
CCGGTGCTCT CGGGCTCCTA TTCCGGCCAT CTCACCGATC CCACCGGCAA GAACCCGAAA
ACCCAGAAGC CCGCCCCCTA TAATTTCTTC TATGGTCCCA GCTATTCCGA CGCCTGCCGC
GCCCTGGTGC AATGGGCCGA GGGCGATTGG AAGGCCAAGG GCAAGGAGGG CAAACCGAAG
TTCATCCATG CCGGCGACAA CCACCCCTAT CCCAACGCCC CCAAGGAGGC CTGCGCCGAT
TTCGCTACGG AACTGGGCTT CGAGGTGCTG CCGCCGGTGG TGGTGTCGCT CAAGCCCGGC
GACTTCAAGG CCCAATGCCT GACCATCAAG CAAAGCGGGG CCAATTACGT TTATGTCGCC
AATCTCGGTC CCTCGGTCGT CTCGTTGGTC AAATCGTGCA AGACGGTGGG CACCGATGCC
CAATACATGG CCAATATCTG GGGCGGAGAT TCGGAAACCC AGAAGACCCT GGGCGCCGAT
GGCGATGGCT ATGTCTTCGT CGCCGCCAAT GCCTTTTGGG GCGATGATGC GCCGGGGCTG
GCGCTGGTGC GCGAGATCGC CGGCTCGGAG ACGCCGCGCA CCCATCACTA CATTCGCGGC
GTCTGTTCCA CCTTCTATAT GAAAGAGGCG ATGGAATGGG CCAAGGCCCA TGGCGGGTTG
ACCGGCGAGT CCATCCGCAA CGCCATGTAC GCCCGCAAGG ACTGGGTGCC CAAGGGCCTG
GAAGGGGTGT GCATTCCCTC GACCTGGACG CCCGAGGACC ATCGCGGCAT GACCAAGGTC
TTCATCTACC AGATGCAGAA CGGCAGCGAG ATCCACAAGA TCGCCGAAAC CGACCTGCCC
CGGCGCGACG ACTGGCTGGG TTATTAG
|
|---|
| Protein sequence | MKTVLSATLA GALLAMLSPF GGAQADDSVF VGHLKDVTGA TGFVGKLYGE GVNDALVWIN
AHGGIDGTRL DFESVDYAYE VPRAIALYKK WTSQNKMVAL QGWGTGDTEA LISFVAKDKI
PVLSGSYSGH LTDPTGKNPK TQKPAPYNFF YGPSYSDACR ALVQWAEGDW KAKGKEGKPK
FIHAGDNHPY PNAPKEACAD FATELGFEVL PPVVVSLKPG DFKAQCLTIK QSGANYVYVA
NLGPSVVSLV KSCKTVGTDA QYMANIWGGD SETQKTLGAD GDGYVFVAAN AFWGDDAPGL
ALVREIAGSE TPRTHHYIRG VCSTFYMKEA MEWAKAHGGL TGESIRNAMY ARKDWVPKGL
EGVCIPSTWT PEDHRGMTKV FIYQMQNGSE IHKIAETDLP RRDDWLGY
|
|---|
| |