| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3466 |
|---|
| Symbol | rocD |
|---|
| ID | 3836918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 3991197 |
|---|
| End bp | 3992444 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637827587 |
|---|
| Product | ornithine--oxo-acid transaminase |
|---|
| Protein accession | YP_428547 |
|---|
| Protein GI | 83594795 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4992] Ornithine/acetylornithine aminotransferase |
|---|
| TIGRFAM ID | [TIGR01885] ornithine aminotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0435653 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCCC TCGCCCCGCC CCTCGCCGCC GGCCTCGCCT CGCCCACCCC CGAGGATCTC
CGCGACTATC TGGAGGTCGA GCATCGCCTG GGCGCGCATA ACTACAAGCC GCTTGATGTC
GTGCTGACCC GGGGCCAGGG GGTTTGGGTG TGGGATGTCG CTGGACGGCG TTACCTGGAT
TGCCTGTCGG CCTATTCGGC GGTCAACCAG GGTCATTGCC ATCCGCGCAT CCTCGAGGCG
CTGATCGCCC AGGCCGGACG GCTGACCCTG ACCAGCCGGG CCTTCCATAA CGACCAGTTG
GCCCCCTTCT ACGAGGAAAT CTGCGCGCTG ACGGGCAGCC ACAAGGTGCT GCCGATGAAC
AGCGGCGCCG AGGCCGTCGA ATCGGCGCTG AAATGCGTGC GCAAATGGGG CTATCGCGAA
AAGGGGGTGG CCGAGGATCA GGCCGAGATC ATCGTCTGTT CCGACAACTT CCACGGCCGG
ACCATCGCCA TCGTCGGCTT TTCCAGCGAT CCCGACGCCC GGCGCGATTT TGGCCCCTTC
GCGCCGGGCT TCCGCTGCGT GCCGTTTGGC GACGGCGACG CCCTTGAAGC GGCCATCACG
CCCAGAACCG TCGCCGTGCT GATCGAACCG ATCCAGGGCG AGGCCGGGGT GATCATTCCG
CCGCCGGGCT ACCTGAAACG GGTTCGTGAT CTGTGTACGG CCCAAGGCGT CATGCTGATC
CTCGACGAGA TCCAGACCGG GCTTGGCCGC ACCGGCGCCC TTCTGGCCGA GGAGCACGAG
GGGATCGAGG CCGATCTGAC CCTGGTCGGC AAGGCGCTGT CGGGCGGCTT CTATCCGGTG
TCGGCGGTGC TGTCGAATTC CGAGGTTCTG GGCGTGCTGC GCCCGGGCGA ACACGGCAGC
ACCTTCGGCG GCAATCCCTT GGCCTGCGCC GTGGCGCGGA TGGCGCTCAA GGTGCTGGTC
GACGAGGATA TGATCGGCAA CGCCGCCCGC CAGGGCGCCT ATTTCCTTGA GAAGCTGCGC
GGCCTGGGCA ATCCGCTGAT CCGCGCGGTG CGGGGCCGCG GCCTGATGCT GGCCGTGGAA
TTCGCCCCCG AAGCCGGCGG CGCCCGGCCG TTTTGCGAAA AGCTCAAGGA CAAGGGCATC
CTTTGCAAGG AGACCCACCG CGACATCATC CGCTTCGCTC CGCCTTTGGT CATCACCGAA
AAAGAAATCG ACTGGGCGAT GGAACGGATC GCCGAGGTCA TCGGTTAA
|
|---|
| Protein sequence | MTSLAPPLAA GLASPTPEDL RDYLEVEHRL GAHNYKPLDV VLTRGQGVWV WDVAGRRYLD
CLSAYSAVNQ GHCHPRILEA LIAQAGRLTL TSRAFHNDQL APFYEEICAL TGSHKVLPMN
SGAEAVESAL KCVRKWGYRE KGVAEDQAEI IVCSDNFHGR TIAIVGFSSD PDARRDFGPF
APGFRCVPFG DGDALEAAIT PRTVAVLIEP IQGEAGVIIP PPGYLKRVRD LCTAQGVMLI
LDEIQTGLGR TGALLAEEHE GIEADLTLVG KALSGGFYPV SAVLSNSEVL GVLRPGEHGS
TFGGNPLACA VARMALKVLV DEDMIGNAAR QGAYFLEKLR GLGNPLIRAV RGRGLMLAVE
FAPEAGGARP FCEKLKDKGI LCKETHRDII RFAPPLVITE KEIDWAMERI AEVIG
|
|---|
| |