Gene Rru_A3396 details

Gene Information

• Locus tag: Rru_A3396
• ID: 3836848
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodospirillum rubrum ATCC 11170
• Kingdom: Bacteria
• Replicon accession: NC_007643
• Strand: +
• Start bp: 3913528
• End bp: 3914148
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637827517
• Product: autoinducer synthesis protein
• Protein accession: YP_428477
• Protein GI: 83594725
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism; [T] Signal transduction mechanisms
• COG ID: [COG3916] N-acyl-L-homoserine lactone synthetase

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTCATCT TGACGGATCG GGAAAACGCG ATTTGCAACG CGTTTCTGCT CCATTCTTTC 
TCCGAATTGC GCCACGAGGT TTTTGTTAAT CGCCTGAAAT GGCCTTTGCA ATGTCCCCCG 
GGCCGGGAAA TCGACCGTTT TGATGATCAG GATGCCGTCT ATATGACGAT TTCCGGCGTC 
GGGGGCCGGG TGGTCGCCGG ATTGCGGCTG CTTGATACCG TCAAACGCAG CCTGTTGAAC 
GAGGTTTTTC CGATGTTGGT CGACGGGCCG CTGCCCCGCG ACCCCAAGGT GATGGATGTG 
ACCCGTTTCG CCGTGGATCA CCGGCCGGAA TACGTGGAGG GAACGGGCAA TCTGTGCGGA 
CTGCTGCTGT GCGCCTTGCA AGATTACGGC TTGGCCCGGG GGTTGACCGG CTATGTCTCG 
GTCTCGGACG TGCGGATGGA GCCGATCCTG CGGCGCGGCG GTTACCGCTT CCGCCGCATG 
GGCGGCATGA TCGAGATGGA CGGCACCGGG GTGGTGGCCC TGGAGGTGGA GATTTCCCCC 
GAGGTGCGGG CGATCGCCCG GCGGCGGGCG GGTGTGAGCG AGCGGGTGCT GGTGGATGAG 
CGTTTGAGGA GCGCAGCGTG A 

 

Protein sequence

MVILTDRENA ICNAFLLHSF SELRHEVFVN RLKWPLQCPP GREIDRFDDQ DAVYMTISGV 
GGRVVAGLRL LDTVKRSLLN EVFPMLVDGP LPRDPKVMDV TRFAVDHRPE YVEGTGNLCG 
LLLCALQDYG LARGLTGYVS VSDVRMEPIL RRGGYRFRRM GGMIEMDGTG VVALEVEISP 
EVRAIARRRA GVSERVLVDE RLRSAA