| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3350 |
|---|
| Symbol | |
|---|
| ID | 3836802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 3864323 |
|---|
| End bp | 3864841 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637827471 |
|---|
| Product | peptide deformylase |
|---|
| Protein accession | YP_428431 |
|---|
| Protein GI | 83594679 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
|---|
| TIGRFAM ID | [TIGR00079] peptide deformylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.954138 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTGC TTCCCATCCT GACGGCGCCT GATCCGCGCC TGACCAAAAA GGCTCTGCCG
GTGGAAACGG TGGATGTCTC CATCCGCAAG CTGATGGACG ACATGCTTGA AACCATGTAC
CTCGCCCCCG GCATCGGCCT TGCCGCCCCC CAGGTCGGGG TACTCAAGCG GGTGATCGTT
CTCGATCCGG CGCGCGAGGA CGAGGCGCCG CGCCCCATGC GTCTGGCCAA TCCCGAGATC
ATCTGGAGCT CCGAGGATAC CAAGCCCTAT GAAGAGGGCT GCCTGTCGGT GCCCGAACAA
TACGATACGG TGGTGCGCCC CGACCGCGTG CGGGTGCGCT ACCTCGATCC CGACAATGAA
ATCCGCGAGA TCGACGCCGA TGGTTTGCTG GCCGTCATCT TGCAGCACGA GATCGACCAT
CTCGATGGTA TTTTGTTCGT CGATTACCTG TCGTCGCTCA AACGCAATAT GATGCTGCGC
AAATTGCGGA AAATGAAGCG GACGGGAGCC GAGGCGTGA
|
|---|
| Protein sequence | MALLPILTAP DPRLTKKALP VETVDVSIRK LMDDMLETMY LAPGIGLAAP QVGVLKRVIV
LDPAREDEAP RPMRLANPEI IWSSEDTKPY EEGCLSVPEQ YDTVVRPDRV RVRYLDPDNE
IREIDADGLL AVILQHEIDH LDGILFVDYL SSLKRNMMLR KLRKMKRTGA EA
|
|---|
| |