| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A3345 |
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| Symbol | |
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| ID | 3836797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | + |
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| Start bp | 3857249 |
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| End bp | 3859366 |
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| Gene Length | 2118 bp |
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| Protein Length | 705 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637827466 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_428426 |
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| Protein GI | 83594674 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCCTC CGGCATCCTC TTCCCCATGT TCCTCGTCCG ATAAGCGCAA CCGCGCGGTC
CCATCCGCCA AAGCCCTTAT GGTCTGGCGG GCGGGCCCCG ACGGTCGCCC CCTTGACCCC
AGCCAATTCC CCCAGGATCC CCCGGCGCGG CGCGACGGCG ATGGGGGCGG GGCCGAGGCC
TGGTTGAACC TTGTCCATCC CGAAGAGCGC GAGGCGGTCT TGCTGCTCTG GCGCCGGGCG
CTGCGCGAAG GCGAAGAGTT CGAAGCCCGC TACCGACTGC ATCGCGGGCT TTCGGGATAC
CGCTGGGCCC TGGGCCAGGG CCGCCCCTTG CGCGGCGACG ATGGCGAAGT GCGCGAATGG
ATCGGCACCG TCGTGGATAT TCACGACCAC ATGGAGGCCG AACGAACCAT CGCCCTGAGC
GAGGAACGCC TGCGCCTCGC CCTCGACAGC GCCGATCTGG GGGTTTGGGA ATGCACCATC
GCCACCAATC AATGGTGGTT TTCCGAAGCG GCGCTGCGGA TCCTTGGCTG TCCCCCCGAC
GCCGAAACGT CCATTGAAAC GGTCATGGGG GCGATCCATT CCGATGATCT CGACGGCCTG
CGCGCCCGTT GGCATGCCGC CCGCACCGGC CGTGCCCGCG ACCGGATGGA AGGGGAGTTC
CGCATTCAAC GCGGCGGCGG CAGGCTCGGC TGGATCGCCT GTTCGGCCCG ATTGGTCGCC
GATGACGGCA AGGCCGTTAC CCGCATGCTG GGCACGCTCC GCGATATCAC CAAGACCCGT
CTTCAGCGCG AGAAGCTCTA TCACCTCGCC CATTTCGATC CGCTGACCGG CTTGCCCAAT
CGCCATGAGA TGATCACCCG CACCCAGGCC ACCCTGGCGA GCGGCGGCGC CGCCGGCGGT
GCCGGAGCGA TCTTGCTGCT CGATCTCGAC GGCTTCAAGG AAGCCAACGA CACCCTGGGG
CAGGCGACAG GCGATGCCCT GCTCAAGCGC ATCGCCCATC GTCTGGTTTC CAGTCTTCCC
GCCGACAGCC TGATCGGCCG GGTCGGCGGC GACGAATTCC TGGTGGTTGT TCCCGGGGTG
GCCGAGCAAT GGACGGCGAC GCGGATCGCC GACGGCCTTT ACGACGTGCT GACCGTTCCC
TTCGTTATCG GCGATCGGCG CATTCCGTTA AGCGGCCGCA TCGGCATCGC CTTGGCGCCC
CGCGATGGCA CCTCGGCCCA GGATCTGATG ACCCATGCCG AACTGGCCTT GCAGGAAACC
AAGACCATCT CGGGCTGCGT CACCCGGTTC TTTTCGCCGC GCCTGCACGA CGAGGCGCGC
GAACGCCAGG ACATGGGACT TGAATTGCGC CGCGCCACCG ACAACGGCGA GTTCGAGCTG
TTCTATCAGC CGCAGATCCG CCTGAGCGAC CGGGCCGTCG TCGGCGCCGA GGCGTTGTTG
CGCTGGCGGC ATCCGACGCG CGGCGTGATG CCGCCCGCCG CCTTCCTTCA TGTCCTCAAA
CGCGGCCCCT TGGCCGGCGA GGTCGGCGAA TGGGTGGTCG CCAAGGCCTG TGCCGATGCC
GCCGGTCTAC TCAACGCCGG CTCGCGAATA CGCATGGCAG TCAATTTATT CTCGGCCCAG
TTCAAGGCCG GCACCGTCGA CGCCACGGTG CGCCGCTCGC TTCTTGAAAG CGGCCTGCCC
GCCGAGTTGC TGGAACTCGA AATCACCGAA AAAGTCACCC TCGACCGCGA CGAGGGCATT
CTTACCTGCC TCAAGGGCTT GCGCGACCTG GGCTGCGGCG TCGCCTTCGA TGACTACGGC
ACCGGCTACG CCTCGCTCAG CATGCTCAAG CGCTATCCGC TGACCCGCCT GAAGATCGAC
CGGGCCTTCG TCCAACATCT GGCCGAGTCA CCCAAGGACG GTGCCATCGT CCGCGCCGTG
TTGTCGCTGG GCAATACCTT CGGCCTGTCG GTCACCGCCG AGGGGATCGA AGAAGAGGAA
CAGGAAAAGC TGCTGCTTGG CCAGGGATGC GACGAGGGTC AAGGGTATTT TTTCGGCCGG
CCGATGCCCT TGGCCGATTT CATCCAATTC CTGGCCCGGG TGAAGAAAAA CCCCGGCGAA
TTCCCCACCC CCGCCTGA
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| Protein sequence | MTPPASSSPC SSSDKRNRAV PSAKALMVWR AGPDGRPLDP SQFPQDPPAR RDGDGGGAEA
WLNLVHPEER EAVLLLWRRA LREGEEFEAR YRLHRGLSGY RWALGQGRPL RGDDGEVREW
IGTVVDIHDH MEAERTIALS EERLRLALDS ADLGVWECTI ATNQWWFSEA ALRILGCPPD
AETSIETVMG AIHSDDLDGL RARWHAARTG RARDRMEGEF RIQRGGGRLG WIACSARLVA
DDGKAVTRML GTLRDITKTR LQREKLYHLA HFDPLTGLPN RHEMITRTQA TLASGGAAGG
AGAILLLDLD GFKEANDTLG QATGDALLKR IAHRLVSSLP ADSLIGRVGG DEFLVVVPGV
AEQWTATRIA DGLYDVLTVP FVIGDRRIPL SGRIGIALAP RDGTSAQDLM THAELALQET
KTISGCVTRF FSPRLHDEAR ERQDMGLELR RATDNGEFEL FYQPQIRLSD RAVVGAEALL
RWRHPTRGVM PPAAFLHVLK RGPLAGEVGE WVVAKACADA AGLLNAGSRI RMAVNLFSAQ
FKAGTVDATV RRSLLESGLP AELLELEITE KVTLDRDEGI LTCLKGLRDL GCGVAFDDYG
TGYASLSMLK RYPLTRLKID RAFVQHLAES PKDGAIVRAV LSLGNTFGLS VTAEGIEEEE
QEKLLLGQGC DEGQGYFFGR PMPLADFIQF LARVKKNPGE FPTPA
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