Gene Rru_A3339 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A3339 
Symbol 
ID3836791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand
Start bp3850574 
End bp3852361 
Gene Length1788 bp 
Protein Length595 aa 
Translation table11 
GC content63% 
IMG OID637827460 
Productputative inner membrane protein translocase component YidC 
Protein accessionYP_428420 
Protein GI83594668 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0706] Preprotein translocase subunit YidC 
TIGRFAM ID[TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.978164 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCAAC AGCGTAACCT TATCCTCGCC ATCGTGCTGT CCATGGCGGT CCTGTTCGGC 
TTCGAATACT TCTTCGGAGC CAAGCAACCC CCGATGACGG CGCAGCAGCA GGACAGCGCC
CAGATGGCGG CGCCATCAAA CGGTCAGATG GCGGCGCCAT CAAGCGTCCA GGCGCCGGGA
CAAAGCCCGG TCGCGGCACC GCAGGTGCCC GCCCAGCCGG GCGCGGCGGT TCCCACGCCC
GGCGGCATGA CCCCCGGCGC GGCAAGCCTG TCGCGTGAAG AGGCCCTGGC CGCCGATATC
AGCCCGCGAA TCGGCATCGA TACCGCCCGC CTGCATGGCT CGATCCGCCT GCGCGGCGCC
CGTATCGACG ACCTTAGCTT GGTCGATTAC CGCGAGACCG TTGATCCGCA GAGCCCGGAA
ATCTCCCTGC TTTCGCCCCC GGGCGCGCCT TTGCCCTATT ATGCCGAATT CGGCTGGGTC
GCCGGCACCC CGGGCGTCAA GGTCCCCGAT GCCGACACCC TGTGGCAGGC CGACCGCGGC
GCGCTGGGCG TCGACGCCCC CGTCACCCTG ACCTGGGACA ACGGCGAGGG CCTGCGCTTC
ATCCGCAAGA TCGCCATCGA CCACGATTTC ATGTTCTCGA TCACCCAGGC GGTGGAAAAC
ACCGGGGCGG GGGCCGTCAC CCTGTTCCCC TATGGTCTGG TTTCGCGGAT CAACACCCCG
GCCCTGCTCA ACTACTACAT CCTTCACGAG GGCCCGCTCG GCGTCTTCGA CGGCACCTTG
AAGGAGGTCA AGTACAGCGC CCTGAAGGAC GATGGCGAGG TCAAGCACAC CTCGACCGGC
GGCTGGATGG GCATCACCGA CAAGTATTGG CTGACCGCCC TGGTCACCGA CCAGTCGATG
CCGGTCACCG GCCGCTTCCT CTATCAGCCG CGCGATGGCC GCGATGGTTA TCAGGCCGAT
TTCCTGGGCG CCGCCTTCAC CGTCGAGCCC GGCGGCCGCA TCGAGACCTC GAACCATCTG
TTCTCGGGCG CCAAGGAAGT GAAGCTGCTC GACCGCTATA CGGACGAGCT GGGCATCAAG
AATTTCGATC TGGCGATCGA TTTCGGCTGG TTCTACTTCA TGACCAAGCC GTTCTTCCTC
AGCATCCAGT TCCTGCATGG CATCCTGGGC AACATGGGTC TGGCGATCCT CGCCTTCACC
GTGGTGCTGA AGCTGGTCTT CTTCCCGCTG GCCAATAAGT CCTATCGGTC GATGTCGAAG
ATGAAGCTGC TCCAGCCCGA GCTGAAGAAG CTTCAGGAGC GCTTCAAGGA CGATCGCGCC
CGCCTTAATC AGGAGATGAT GTCTCTTTAT AAAAAAGAGC AGGTCAATCC CTTGTCGGGC
TGTCTGCCGA TCGTCATTCA GATCCCGGTG TTCTTCGCCC TCTATAAGGT TCTGTTCGTT
TCCATCGAGA TGCGCCACGA GCCGTTCTAT GGCTGGATCC GCGATCTCGC CGCCCCCGAT
CCGACCACCG TCTTCAACCT GTTCGGGCTG ATCCCCTGGG ATCCGCCGAA CATGCTGATG
CTGGGCGCTT GGCCGCTGAT CATGGGCGTG ACCATGTGGA TGCAGCAGAA GCTGAACCCG
ACTCCGGCCG ATCCGACCCA GGCCAAGATC ATGATGTTCC TGCCCATCAT GTTCACCTTC
ATGCTGGCCC ATTTCGCCGC CGGACTGGTG ATCTACTGGA CCTGGAACAA CTTGCTCTCG
ATCACCCAGC AGTGGGTCAT CATGAAGCGG ATGGGGGCTA AGACCTAA
 
Protein sequence
MLQQRNLILA IVLSMAVLFG FEYFFGAKQP PMTAQQQDSA QMAAPSNGQM AAPSSVQAPG 
QSPVAAPQVP AQPGAAVPTP GGMTPGAASL SREEALAADI SPRIGIDTAR LHGSIRLRGA
RIDDLSLVDY RETVDPQSPE ISLLSPPGAP LPYYAEFGWV AGTPGVKVPD ADTLWQADRG
ALGVDAPVTL TWDNGEGLRF IRKIAIDHDF MFSITQAVEN TGAGAVTLFP YGLVSRINTP
ALLNYYILHE GPLGVFDGTL KEVKYSALKD DGEVKHTSTG GWMGITDKYW LTALVTDQSM
PVTGRFLYQP RDGRDGYQAD FLGAAFTVEP GGRIETSNHL FSGAKEVKLL DRYTDELGIK
NFDLAIDFGW FYFMTKPFFL SIQFLHGILG NMGLAILAFT VVLKLVFFPL ANKSYRSMSK
MKLLQPELKK LQERFKDDRA RLNQEMMSLY KKEQVNPLSG CLPIVIQIPV FFALYKVLFV
SIEMRHEPFY GWIRDLAAPD PTTVFNLFGL IPWDPPNMLM LGAWPLIMGV TMWMQQKLNP
TPADPTQAKI MMFLPIMFTF MLAHFAAGLV IYWTWNNLLS ITQQWVIMKR MGAKT