Gene Rru_A3213 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A3213 
Symbol 
ID3836659 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand
Start bp3703369 
End bp3705705 
Gene Length2337 bp 
Protein Length778 aa 
Translation table11 
GC content67% 
IMG OID637827328 
ProductPAS/PAC sensor Signal transduction histidine kinase 
Protein accessionYP_428295 
Protein GI83594543 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCGGCGA TAGACGGACC AGGATTGGAC TCGCGACTAA TAGATATATT CGACCACCTG 
GACGAGGGGG TGGCCCTCTA TGGTCCCGAT CATCGTCTGA TCCGTTTCAA CCGGCCTTTC
GCCAGCCTTG TCGAAACCGC CGGCGGGCGT CCCGCCCCAG GCCAAAGGAT GGTCGAAATC
CTGCGCGATT TGGTCGCGCC GGACACCGGG GAGGAGAATC GGGCCGACTC CGGCCCCGAC
GACGACGGGC GAGGGACCGA GGACGACGCC GCGGAGCGCC TGGAAGGAGC CCTGCTGGGA
ACGCCCACCG AGATCCGCCT GGGCCGGGAT CGATGGGGTC TGGTCCATGG TCACCGCCTG
AAGGACGGCG CCCTGTTTTG CGTTCTCCGC GATATCACCG CGTCAAAAGC CGGGGCCGCA
CGGATCGCCG AGAGCAACCG CCGCATCCGC GAGGCCGAAA GCCGCCTGGA ACGCGCCCTC
GAGTCGATCG ACCAGGGGTT CTATCTGTGC GACGCCAGCG ACACGGTGGT GCTGCGCAAC
GCCAAGCTCG CCCATCTGCT GCCGGGCTTG CCCCCCCTCG AGCCGGGCAC GACCTATGGC
GCGATGATGG CCGCCGCCTG TGACAACGGC GCCATCCCCG CCGCCACGCG CCACCGCACC
CGCTGGCTGA GCCTGTGCAT GGCCCGCCAC CATCTGCCGC GCGGCGCCTG GGACTTCGAG
AACGGCCGGG GCCGCTGGGT TCGGGTTTCC GAATCCCTTA CCCCCGAGGG CGGACGGGTC
GGCCTGCTGA CCGACATCAC CGAGACCCGC AAGGCCTCCG AACAGGTGCG CCAGCGCGAA
CAGCGCCTTG ACGGCATCAT GAAGACCGTC GTCGACGGCA TCGTCGTCAT CGATGAAAAC
GGCATTATCG AATCGTTCAA TCCCGCCGCC GAACGGCTTT TCGGCTATCG GGCCGAAGAG
GTGGTGGGCG CGTCGATCAA CCGGCTGATC CCGGGCGGCG AGAGCGGCCG CCACGACCGC
TCCCTGCGGC GCTATCTGCA AACCGGCCAG GCCGGCATCA TCGGCCGGGG CCGCGAGGAA
CTGGCCCTGC GCCGCGACGG CTCGCTGCTT CCCGTCGAAC TGGCGATCAG CGAATTGCGG
CTGGACGACC GGCGCATCTT CACCGGCCTG GTGCGCGACA TCAGCGCCCG CAAGGAAGCC
GATCGCCAGC TGCGCGAAAA CGAGGAACGC TACGCCCTGG CCATCGCCGG CACCCATGAG
GCCATCGTCG ATTGGGACAT CGACAGCGAC ACCATCACCT ATTCCGACCG CATCACCGCC
ATCGTCGGCC TTGATCCCAA GGATCTGGAC CGCTCGGCGA GCTGGATCGC GCTGATCCAT
CCCGACCATC GCAAGGATTA CTTGACGCGG ATGGACGCCC TGCTGCGCGG CGAGAGTTCA
TTCTTTTCGT GCGATTTCCG TCTGGCCGGA CGGGCGGGAG CCGAGGAACG CTGGCTGCGC
CACCGGGCCA CCGCGCTGCG CCGCCCCGAT GGCCAGATCT ATCGCCTGTC GGGCGCGGTC
GGCGACATCA CCGACAGCCG CCGCGGCGAG GATCGCCTGC GCGAGGCCAA GGAGGCCGCC
GAATTCGCCA ATCGGGCCAA AAGCGAATTC CTGACCAATA TGAGCCACGA GCTGCGCACG
CCGCTCAACG CCATCATCGG CTTCTCGGAG GTCCTTCACA GCGAGATGTT CGGACCGCTG
GGCGCGACGC AATACCTGGA CTATGCCGCC AGCATCCGCG ATTCGGGGCG CCATCTGCTC
GACGTGATCA ACGATATCCT CGATGTCAGC CGCATCGAGG CCGGGCGGGC GACGCTGTTT
CCCGAACCGC TTGATTTCGC CGAGATCGTC GCCTCGGTGC ACCGGCTGGT CAACCAGAGG
GCCGAGGCCG CCGGCGTCCG CCTGAAGATC ACCCTTGATC CGGCGCTGCC GCCCCTGCTT
GGCGAGGCCC GCCGGCTCAA GCAGGTTCTG ATCAACCTTC TGGGCAACGC CATCAAATTC
ACCCCGGCCG GCGGCGAGAT CGCCCTGTCG GCCAGGGGCG ATGAGGACAA AGGCCAGATG
GTGATCGAGG TCAGCGATTC GGGGATCGGC ATGGCGCCCG AGGATATCCC GCTCGCCCTT
GAGCCCTTCC GTCAGATCGA TGGCCAACTG GCCCGGCGCT ACGAGGGGAC CGGCCTGGGA
CTGCCGCTGT CAAAAGCCTT CGTCGAACTG CACGGCGGGA CGCTCCGAGT CGACAGCACG
CCGGGCGCGG GCACCCGCAT CACCGTGCGC CTGCCCGCCG GAGCGGTGGA ATCCTAA
 
Protein sequence
MSAIDGPGLD SRLIDIFDHL DEGVALYGPD HRLIRFNRPF ASLVETAGGR PAPGQRMVEI 
LRDLVAPDTG EENRADSGPD DDGRGTEDDA AERLEGALLG TPTEIRLGRD RWGLVHGHRL
KDGALFCVLR DITASKAGAA RIAESNRRIR EAESRLERAL ESIDQGFYLC DASDTVVLRN
AKLAHLLPGL PPLEPGTTYG AMMAAACDNG AIPAATRHRT RWLSLCMARH HLPRGAWDFE
NGRGRWVRVS ESLTPEGGRV GLLTDITETR KASEQVRQRE QRLDGIMKTV VDGIVVIDEN
GIIESFNPAA ERLFGYRAEE VVGASINRLI PGGESGRHDR SLRRYLQTGQ AGIIGRGREE
LALRRDGSLL PVELAISELR LDDRRIFTGL VRDISARKEA DRQLRENEER YALAIAGTHE
AIVDWDIDSD TITYSDRITA IVGLDPKDLD RSASWIALIH PDHRKDYLTR MDALLRGESS
FFSCDFRLAG RAGAEERWLR HRATALRRPD GQIYRLSGAV GDITDSRRGE DRLREAKEAA
EFANRAKSEF LTNMSHELRT PLNAIIGFSE VLHSEMFGPL GATQYLDYAA SIRDSGRHLL
DVINDILDVS RIEAGRATLF PEPLDFAEIV ASVHRLVNQR AEAAGVRLKI TLDPALPPLL
GEARRLKQVL INLLGNAIKF TPAGGEIALS ARGDEDKGQM VIEVSDSGIG MAPEDIPLAL
EPFRQIDGQL ARRYEGTGLG LPLSKAFVEL HGGTLRVDST PGAGTRITVR LPAGAVES