Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_A3109 |
Symbol | |
ID | 3836555 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007643 |
Strand | + |
Start bp | 3579694 |
End bp | 3585639 |
Gene Length | 5946 bp |
Protein Length | 1981 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637827224 |
Product | aspartate racemase |
Protein accession | YP_428191 |
Protein GI | 83594439 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [COG1020] Non-ribosomal peptide synthetase modules and related proteins |
TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCCGCCC CCCGCTGGGC CACCATGGGC GCCATGCTTC TCGATCGCGC AGCTTCTCTT GAAGAAAGCT GCGCTTATCG CTTCTTGCAT GACGGAGGGG GAGGGCCGGA GGTTCGCAGC TATCGGGCGC TGACCAGCCG CGCCCTTGAT ATCGCCACGT TTCTTTTGGC GAAGGGCTGC GCCAAGCGGC CGGTGCTGAT CTTATTGCCC ACCGGCATGG CCTTCGTCGA AGCCCTGTTT GGCTGTTTTC TGGCCGGGGC CATCGCCGTG CCGGCACCGC CACCCACCGG AACGCGCGGC TTGCCGCGCA TCCGCGGCAT TCTCGCCGAT TGCGCGCCGC CGCTGGCCCT GGTCGTCGAG CCGCCGCAGA TCGACCGCCT GGGCGGCGGC GACGACGCTC CGCTCGCCCG AACCGAGTGG GTTCGCGTAG CCGATATCCC CGCCTGCGCC ACCCCCGATC CGTCTATGGT CGAAGCGGTC GCCCCCGGGG ATATCGCGGT TTTGCAATAC ACCTCGGGCT CGACCGGCAC CCCGAAAGGC GTGGTGATTT CCCATCGCAA CGCCCTGATC AATCTGGCCC AGCAAAAATC CGGCATGCGC GCCCCCGATG GGGCGCGTCT GGTGTCGTGG CTTCCCGTCC ATCACGACAT GGGCCTGTTT GGCAATATCC TGATTACCGT GGCAGTCGGC GGCGAGTTGA GCTTCATGGC GCCGTCGTCC TTCCTGCAAA AGCCGATCCG CTGGGTTCAA GCGATCTCCG ATTACCGGGG GCAGGCCTCG GGCGGACCGG ATTTCGGCTT CGATCTCTGC GCCAGACGGG CCCAGCCCGC CGATCTGGCC GCTCTCGACC TATCAAGCTG GACCACCGCC TATTCGGGGG CCGAACCGGT GCGGGCGGCG ACGCTTGAAC GCTTCGCCCG GGTCTTCGCC GCCAGCGGCT TTCGTTGCGA GGCGCTGCGC CCCTGCTATG GTCTGGCCGA GGCGACGCTG ATCGTTTCAG TTCAGGCGGT GACCCAGTCC CTCGACGTGC GGCGCTACGA TCGCCAATCC CTGTTCGCCG GCATCGCCCG CCAGAGCGAC GACGGCGAGG CCCTGACCAG CTGCGGCCCG GCGGTCGAGG GCATGGAGAT CGCCATCGTC GATGCCGCCA CCAGCCAGCC GCTGCCCGAC AACCGCGTGG GCGAAATCTG GCTGTCGGGG CCCAATCTGG CCGAAGGCTA TTGGAACCAG CCGCAGATGA CGGCCAAGCG CTTCGGCGCC CGCTTGGCCG GGCGCGGCGA TCGCTGGTTG CGCAGCGGCG ATGTCGGCTT CCTAGATCGC GGCCAGTTGT TCGTCGTCGG CCGCGCCGAT GACATGATCA TCCTGCGCGG GCGCAATATT CCCCCCGACG ATATCGAAAA CGCGGCCCTG GTCTCGCCGA TCCAGGTGGC GGGATCGGCC GTCGCCCTGG CCGCGCCCGA CGAGGGCGGC GTCATTCTGG TTCAGGAGGT GGCGCGCGGC CAAGGGGCGC GCGATTTCCC GCTGCTCGGC GCCCAGATGC GCGCCGCCGT CGCCGACGCC ACCGAAACCG CCCTCTCGCG CATCGCCTTC GTCCGCTTCG GCTCGATCCC GCGCACGACC AGCGGCAAGA TCCGGCGACG GGAAACCGGC CTTCTGCTTG CCCGCGACGC CCTGCCCATC GTGCACGACG ACCGGGGTGG CCGTCCCGCC GAGGGCGAAG AGGCCGGGCC GGCGCCAGCT TCGGCCGATC CCCAGACGCC GCCGCTCGAA CGCCTGCGTC TTGAAGCCGC CCGCCTGCTT GGCCTGGAAA AGCCGCCGAT GGCCGATACG CCGCTGGTGG CGCTCGGCAT TGATTCGCTG CGCGCCGCCG AACTGGCCGA TTGGGTTGCC GAGACCTTTG GCACGAGCTT GCCGCTTTCG ACCTTCTTCA CCGAGACCGC CACCCTGGCC GAGATCGCCC GGGCGATCGG GTCCTCGCCG CAATCCGGCG GCCTCGCGCT GTTTCCGCCC CCCGCCGCCG TGGCCCGCGA CGTCGTTCCG CTGACACGCG GCCAGCAAAC CCTGTGGGTC GCCGCCCGCC GGGCGCCCGA GAGCGTTGGC AATACCCTGT CGTTGGGCGT GGTGGTCGGC GAGACGCCGC CGCAAACGCT CCAGAGCGCC CTTGACCGGC TTTCGCTGGC CCATCCGCTG CTGCGCTCGG TTTTCCGGCT GCGCGAAAAC GATCCGGTGC GGGTGGTGCA TGCCCAACCG GAGGTGACCA TCGCGCCCAT CGTTTGGCAC GGCGAGGACG AAGGGCGGGA GGAGGCGCTT GACGCCTTCC TGCGCCAACC GCTCGTCCTG GAGGATGGCC CCCCCTGGCG AGCCGGTTTG CTGCGCAACG GGCGATCGAC CCTGCTGGTG CTGGCCCTCC ACCATATCCT GGCCGATGGC CGCGCCCTGG TCCTGCTTGG CAAGGCCCTG GCCGCCGAGA TCGACGCCGG GACGACCGCC GCCCCGGACG ACGCCCCCGC CGCCGATCGC TTCGCCGAAG CCGTTGGCGA GGAAGAGGCC TATCTTTGCC GCCCCGAGGC TTGGCGCGCC CTGACCTTTT TCCGCCAGTC GCTGGCCGAT CTTCCCGACC CCCTGCCTTT GGCCCCGGCC GGCTGGGACG GCCGCCCGGC GCCCCGGCCG CGCATCGTTT CCCTGCCGAT AAGCCCGTCC CGCCTCGCCG GGCTCAAGCG CTCGGCCGCC GTGCTGGGCA GCCCGCCGGC GCGGTTGATG TTCGGCCTGT TCGTCCTTGC CCTCGCCCGT CTGACCAGCC GCGACGATCT GGTGGTCAGC GTGGTTTCGA CCAATCGCCC GGCCGGGCAG GCGATGACCA TCGGCTATTT CGCCAATCCT TTGCCCGTCC GCCTGCATCT TGGCCTGGAG GCGACGGCCC CGCTCGACCG GGTTTTGATC CAGGCGATGG CCGCCCTGTC GACGACGCTC GATCACCGGC TGCTGCCCTT CTCGGAAATC GTCCGCGCCG CCGTGCGCCC CGGCGAAGCG CAAAGGCTGC TCCAATGCGT GTTCACCCAT GTCGGGGTCG ATGAGGGCTT CCAGGGCGAT CTGGCCAGCG CCCTGGCCGT GGCGCAAGAC CGGCCGGTTC CCTTCCTGCT GCGTCCCCAG GAGGGCGAGG CGGCGCTTGC CCTGACCTTC GTCGAAGGCG GGGGAGGCGC CCGCCTTGAT CTGGCCATCG ACGATGGCGC CGTCGCCGCC GCCATCGGTC AGGCCCTGCC GACGATGATC GGGAATTTGG CCACCGCCCT GGCCGAGGCG CCCCATCTGC CGCTGTCGGG GGTGCCGGCG ATGGCCGCGT CGGTCCTTGA GCGCATGGGT CAATGGGAAA GCGGCCCGCG CGCCGCCCTC GCCCTGCGCG AGGAGGGCTG GTCGCTGGGC GCGCTGTTCG TCCGCGCCGT CCGCGACCAC GCCGCCCGCG TCGCCCTTGA GGCGGGGCGG ACGCGCTGGA CCTATGACGT CCTGGGCGGG CAGGTCGCGG CGATCGCCAG CCAGTTGCAG GACCTGGACC TGCGGCCGGG CGATGTCGTC GCCCTGCATA TGGCGGCGGG CCCGCTGTGG GTGGCCTGCC TGCTGGCCAC GCTGGTTCGC GGCCTGTCGT TTCTGACCCT CGATCCCAGC CACCCGGCCG AACGCAATCA CGCCCTGCTC GAAGGCGCAC GGGCCAAGGT CGTGATGGCC GCCCCGGGCC TCCCCCCGCT CGCCGAGCTG CCGACCCTGG TCCCGGCCGA CCCCGATGCT CGCACTCCGG CCTTGTCGAC CCTGCTGGTT GCCCTGAGCG AGGTCGACGC CACCCCGGCC TATGTCATCT TCACCTCGGG CTCGACCGGC AAGCCCAAGG GCGTGGTCGT CGCCCAGGGC GGGCTGCGCG ACCGCTTGCT GTGGAAAATC GAAGCCCTTG ACCTCGGCCC CGGCGAGCGG GTCTTGCAAA GCATGCAGAC CATCTTCGAT CCCGCCTTGT GGGAGACCCT GGCGCCGCTG CTCGCCGGCT CCACCCTGGT CATCGCCGAT CCCGAGGTGC GTTCCTCGCC CCGCCGGCTC GCCGAGACCC TGCTATCGGC CAAGATCACC GTCGCCACCT GCATTTCCGG CATGGTGGGC CCCTTGGGGC AGGCTCTGGC GGGTCTGGGA GGCAAGGGCG ATGATCTGGC GCTCCGCCGC ATCGTCGCCG GCGGCGAGGC CCTGCCCAAC GCCGTCGCCC GCGCCTTCGT CGAGCAGACC GGCGCCCGCA TCGAGCATTT CTATGGCCCG ACCGAGGCGA CGATCTTCTG CACCCATCAG GGGGTCGGCC CCGCCGACAC CTTGCCCGAG GACGGCATCC TGCCCATCGG CCGACCGGTC GCCGGGGCGC GGGTGGCGAT CGTCGATCTC ACCGGCGCCC CCTGCCCGCC CGGCGTCATC GGCATGGTAG ACCTGTCGGG CATCGGTCTG GCTTTGGGAT ATCTTGGCGC CGATGGCGCG GTGATCGGCA CGGGCGGCGG CTTCCGTCAG CACGGCGAGA GCCGGGTCTA CGCCTCGGGC GACCTGGGGC GATGGCGATC GGATGGCCGG ATCGAGGTGC TGGGCCGCCA GGATACCCAG GTCAAGATCC GCGGGGTTCG CATCGACCTT GCCGAGGTCG AAGCGGTGCT GCTTGCCCAT TCCCTGGTCG GCGAGGCCGC CGTCATCGCC GCCAAACGCG CCGGGGTCAG CACCCTGCAC GCCTTCGTGA CCGGCGACCA GGACATCGAT AGCGAGGCTT TACGCAAGGA TCTGGCCGGC CGCCTGCCGC CGGCGATGCG GCCGACGACG CTGCGCGCGG TGTCGGGATT GCCCCGCCTG GCCAATGGCA AGATCGATCG CGCCGCCCTC GACCGCCAGA TCCCCGAGGC GACCGGCCCC GCCCTGCCCG CCGCCACCGC GCCGCTGGGA CCGCAGGAAC CGCTGGAGGC CACCTTGTTG CGCTGCTGGC AACAGGTGCT CGCCCAACCC GACCTGGGGG TGACCGACGA TCTGTTCGAA CGCGGCGGTC ATTCGCTGCT GGCCTTGCGC GTCTGCGCCA TGGTGGAAGA CATCAGCGCC CGGGTCATCG CCCTTGATCC CTTGCTGCGC AATGTCAGCG TCCGCGAGCA GGCGCGCGCC ATCCTGGCGG GCAATAGCGG CCGGGATGAC AAGGCGCCCA CCCTGACCCG GCTGTCGACC ACCGCCAGCG GCCCGGATTT CGTTTGCATC GCCGCCGGCT TTGGCGACCT GCGCCGCCTC AAGGCCCTGG CCGACGCCCT GGGCCCCCGG GCCAATGTCT GGGGGTTGTT CCCCCCCGCC CTGCTTTCGG CCGGCCCGGC CGGATTGGCC GAGCTGATCG CCGCCTATCG CCAGATTTTG CTCCAGCGCT TCGGCGCCCG GCCCTTCGCT TTGGCCGGCT TCTCGGTGGG CGGGGTCATC GGCCTGGAAC TGGCCGCCAC CCTGCGAGCC GAGGGGCTGG CCATCGACCA TCTGGTACTG CTTGATTCGG TCTTCCCCTT CCTGATGAAG CTCAACCTAA GGCTCCACGA CCTGCTGCGC GCCATGGTGA CCTTCCGCTG GACCAACCGC CTGATGCGCT TCGCCTTCGG CCGCAGGCTG CGGCGGTTCT TCATGGACGA GGGGTTGTCG GCCCACCTGA AGGCGGCGGC CTATTGCCGC CAAAAATTCG GTGGCACGGT GACGGTGGTC CGCTCGCGCG CCGCCCGTCC GTTCTCGGCG GTGCTGTTCT GGCCCTGGCG GCTGCGGGCC AAGCGGCTGG CCTGGGAAGA CGCCAGCGGC TTCCACGGCA GCATGTTCTC GGCCGACCAT GTCGGCTCGC TGGCCGAAGC GGTCGCCCGC CTCAACGCCG CAACCTCCCT TCCCCCCCCT CCCCCACCCC TGCCCCCCCG GGCCTTGCCG GTGTGA
|
Protein sequence | MPAPRWATMG AMLLDRAASL EESCAYRFLH DGGGGPEVRS YRALTSRALD IATFLLAKGC AKRPVLILLP TGMAFVEALF GCFLAGAIAV PAPPPTGTRG LPRIRGILAD CAPPLALVVE PPQIDRLGGG DDAPLARTEW VRVADIPACA TPDPSMVEAV APGDIAVLQY TSGSTGTPKG VVISHRNALI NLAQQKSGMR APDGARLVSW LPVHHDMGLF GNILITVAVG GELSFMAPSS FLQKPIRWVQ AISDYRGQAS GGPDFGFDLC ARRAQPADLA ALDLSSWTTA YSGAEPVRAA TLERFARVFA ASGFRCEALR PCYGLAEATL IVSVQAVTQS LDVRRYDRQS LFAGIARQSD DGEALTSCGP AVEGMEIAIV DAATSQPLPD NRVGEIWLSG PNLAEGYWNQ PQMTAKRFGA RLAGRGDRWL RSGDVGFLDR GQLFVVGRAD DMIILRGRNI PPDDIENAAL VSPIQVAGSA VALAAPDEGG VILVQEVARG QGARDFPLLG AQMRAAVADA TETALSRIAF VRFGSIPRTT SGKIRRRETG LLLARDALPI VHDDRGGRPA EGEEAGPAPA SADPQTPPLE RLRLEAARLL GLEKPPMADT PLVALGIDSL RAAELADWVA ETFGTSLPLS TFFTETATLA EIARAIGSSP QSGGLALFPP PAAVARDVVP LTRGQQTLWV AARRAPESVG NTLSLGVVVG ETPPQTLQSA LDRLSLAHPL LRSVFRLREN DPVRVVHAQP EVTIAPIVWH GEDEGREEAL DAFLRQPLVL EDGPPWRAGL LRNGRSTLLV LALHHILADG RALVLLGKAL AAEIDAGTTA APDDAPAADR FAEAVGEEEA YLCRPEAWRA LTFFRQSLAD LPDPLPLAPA GWDGRPAPRP RIVSLPISPS RLAGLKRSAA VLGSPPARLM FGLFVLALAR LTSRDDLVVS VVSTNRPAGQ AMTIGYFANP LPVRLHLGLE ATAPLDRVLI QAMAALSTTL DHRLLPFSEI VRAAVRPGEA QRLLQCVFTH VGVDEGFQGD LASALAVAQD RPVPFLLRPQ EGEAALALTF VEGGGGARLD LAIDDGAVAA AIGQALPTMI GNLATALAEA PHLPLSGVPA MAASVLERMG QWESGPRAAL ALREEGWSLG ALFVRAVRDH AARVALEAGR TRWTYDVLGG QVAAIASQLQ DLDLRPGDVV ALHMAAGPLW VACLLATLVR GLSFLTLDPS HPAERNHALL EGARAKVVMA APGLPPLAEL PTLVPADPDA RTPALSTLLV ALSEVDATPA YVIFTSGSTG KPKGVVVAQG GLRDRLLWKI EALDLGPGER VLQSMQTIFD PALWETLAPL LAGSTLVIAD PEVRSSPRRL AETLLSAKIT VATCISGMVG PLGQALAGLG GKGDDLALRR IVAGGEALPN AVARAFVEQT GARIEHFYGP TEATIFCTHQ GVGPADTLPE DGILPIGRPV AGARVAIVDL TGAPCPPGVI GMVDLSGIGL ALGYLGADGA VIGTGGGFRQ HGESRVYASG DLGRWRSDGR IEVLGRQDTQ VKIRGVRIDL AEVEAVLLAH SLVGEAAVIA AKRAGVSTLH AFVTGDQDID SEALRKDLAG RLPPAMRPTT LRAVSGLPRL ANGKIDRAAL DRQIPEATGP ALPAATAPLG PQEPLEATLL RCWQQVLAQP DLGVTDDLFE RGGHSLLALR VCAMVEDISA RVIALDPLLR NVSVREQARA ILAGNSGRDD KAPTLTRLST TASGPDFVCI AAGFGDLRRL KALADALGPR ANVWGLFPPA LLSAGPAGLA ELIAAYRQIL LQRFGARPFA LAGFSVGGVI GLELAATLRA EGLAIDHLVL LDSVFPFLMK LNLRLHDLLR AMVTFRWTNR LMRFAFGRRL RRFFMDEGLS AHLKAAAYCR QKFGGTVTVV RSRAARPFSA VLFWPWRLRA KRLAWEDASG FHGSMFSADH VGSLAEAVAR LNAATSLPPP PPPLPPRALP V
|
| |