Gene Rru_A3109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A3109 
Symbol 
ID3836555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand
Start bp3579694 
End bp3585639 
Gene Length5946 bp 
Protein Length1981 aa 
Translation table11 
GC content70% 
IMG OID637827224 
Productaspartate racemase 
Protein accessionYP_428191 
Protein GI83594439 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
[COG1020] Non-ribosomal peptide synthetase modules and related proteins 
TIGRFAM ID[TIGR01733] amino acid adenylation domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCGCCC CCCGCTGGGC CACCATGGGC GCCATGCTTC TCGATCGCGC AGCTTCTCTT 
GAAGAAAGCT GCGCTTATCG CTTCTTGCAT GACGGAGGGG GAGGGCCGGA GGTTCGCAGC
TATCGGGCGC TGACCAGCCG CGCCCTTGAT ATCGCCACGT TTCTTTTGGC GAAGGGCTGC
GCCAAGCGGC CGGTGCTGAT CTTATTGCCC ACCGGCATGG CCTTCGTCGA AGCCCTGTTT
GGCTGTTTTC TGGCCGGGGC CATCGCCGTG CCGGCACCGC CACCCACCGG AACGCGCGGC
TTGCCGCGCA TCCGCGGCAT TCTCGCCGAT TGCGCGCCGC CGCTGGCCCT GGTCGTCGAG
CCGCCGCAGA TCGACCGCCT GGGCGGCGGC GACGACGCTC CGCTCGCCCG AACCGAGTGG
GTTCGCGTAG CCGATATCCC CGCCTGCGCC ACCCCCGATC CGTCTATGGT CGAAGCGGTC
GCCCCCGGGG ATATCGCGGT TTTGCAATAC ACCTCGGGCT CGACCGGCAC CCCGAAAGGC
GTGGTGATTT CCCATCGCAA CGCCCTGATC AATCTGGCCC AGCAAAAATC CGGCATGCGC
GCCCCCGATG GGGCGCGTCT GGTGTCGTGG CTTCCCGTCC ATCACGACAT GGGCCTGTTT
GGCAATATCC TGATTACCGT GGCAGTCGGC GGCGAGTTGA GCTTCATGGC GCCGTCGTCC
TTCCTGCAAA AGCCGATCCG CTGGGTTCAA GCGATCTCCG ATTACCGGGG GCAGGCCTCG
GGCGGACCGG ATTTCGGCTT CGATCTCTGC GCCAGACGGG CCCAGCCCGC CGATCTGGCC
GCTCTCGACC TATCAAGCTG GACCACCGCC TATTCGGGGG CCGAACCGGT GCGGGCGGCG
ACGCTTGAAC GCTTCGCCCG GGTCTTCGCC GCCAGCGGCT TTCGTTGCGA GGCGCTGCGC
CCCTGCTATG GTCTGGCCGA GGCGACGCTG ATCGTTTCAG TTCAGGCGGT GACCCAGTCC
CTCGACGTGC GGCGCTACGA TCGCCAATCC CTGTTCGCCG GCATCGCCCG CCAGAGCGAC
GACGGCGAGG CCCTGACCAG CTGCGGCCCG GCGGTCGAGG GCATGGAGAT CGCCATCGTC
GATGCCGCCA CCAGCCAGCC GCTGCCCGAC AACCGCGTGG GCGAAATCTG GCTGTCGGGG
CCCAATCTGG CCGAAGGCTA TTGGAACCAG CCGCAGATGA CGGCCAAGCG CTTCGGCGCC
CGCTTGGCCG GGCGCGGCGA TCGCTGGTTG CGCAGCGGCG ATGTCGGCTT CCTAGATCGC
GGCCAGTTGT TCGTCGTCGG CCGCGCCGAT GACATGATCA TCCTGCGCGG GCGCAATATT
CCCCCCGACG ATATCGAAAA CGCGGCCCTG GTCTCGCCGA TCCAGGTGGC GGGATCGGCC
GTCGCCCTGG CCGCGCCCGA CGAGGGCGGC GTCATTCTGG TTCAGGAGGT GGCGCGCGGC
CAAGGGGCGC GCGATTTCCC GCTGCTCGGC GCCCAGATGC GCGCCGCCGT CGCCGACGCC
ACCGAAACCG CCCTCTCGCG CATCGCCTTC GTCCGCTTCG GCTCGATCCC GCGCACGACC
AGCGGCAAGA TCCGGCGACG GGAAACCGGC CTTCTGCTTG CCCGCGACGC CCTGCCCATC
GTGCACGACG ACCGGGGTGG CCGTCCCGCC GAGGGCGAAG AGGCCGGGCC GGCGCCAGCT
TCGGCCGATC CCCAGACGCC GCCGCTCGAA CGCCTGCGTC TTGAAGCCGC CCGCCTGCTT
GGCCTGGAAA AGCCGCCGAT GGCCGATACG CCGCTGGTGG CGCTCGGCAT TGATTCGCTG
CGCGCCGCCG AACTGGCCGA TTGGGTTGCC GAGACCTTTG GCACGAGCTT GCCGCTTTCG
ACCTTCTTCA CCGAGACCGC CACCCTGGCC GAGATCGCCC GGGCGATCGG GTCCTCGCCG
CAATCCGGCG GCCTCGCGCT GTTTCCGCCC CCCGCCGCCG TGGCCCGCGA CGTCGTTCCG
CTGACACGCG GCCAGCAAAC CCTGTGGGTC GCCGCCCGCC GGGCGCCCGA GAGCGTTGGC
AATACCCTGT CGTTGGGCGT GGTGGTCGGC GAGACGCCGC CGCAAACGCT CCAGAGCGCC
CTTGACCGGC TTTCGCTGGC CCATCCGCTG CTGCGCTCGG TTTTCCGGCT GCGCGAAAAC
GATCCGGTGC GGGTGGTGCA TGCCCAACCG GAGGTGACCA TCGCGCCCAT CGTTTGGCAC
GGCGAGGACG AAGGGCGGGA GGAGGCGCTT GACGCCTTCC TGCGCCAACC GCTCGTCCTG
GAGGATGGCC CCCCCTGGCG AGCCGGTTTG CTGCGCAACG GGCGATCGAC CCTGCTGGTG
CTGGCCCTCC ACCATATCCT GGCCGATGGC CGCGCCCTGG TCCTGCTTGG CAAGGCCCTG
GCCGCCGAGA TCGACGCCGG GACGACCGCC GCCCCGGACG ACGCCCCCGC CGCCGATCGC
TTCGCCGAAG CCGTTGGCGA GGAAGAGGCC TATCTTTGCC GCCCCGAGGC TTGGCGCGCC
CTGACCTTTT TCCGCCAGTC GCTGGCCGAT CTTCCCGACC CCCTGCCTTT GGCCCCGGCC
GGCTGGGACG GCCGCCCGGC GCCCCGGCCG CGCATCGTTT CCCTGCCGAT AAGCCCGTCC
CGCCTCGCCG GGCTCAAGCG CTCGGCCGCC GTGCTGGGCA GCCCGCCGGC GCGGTTGATG
TTCGGCCTGT TCGTCCTTGC CCTCGCCCGT CTGACCAGCC GCGACGATCT GGTGGTCAGC
GTGGTTTCGA CCAATCGCCC GGCCGGGCAG GCGATGACCA TCGGCTATTT CGCCAATCCT
TTGCCCGTCC GCCTGCATCT TGGCCTGGAG GCGACGGCCC CGCTCGACCG GGTTTTGATC
CAGGCGATGG CCGCCCTGTC GACGACGCTC GATCACCGGC TGCTGCCCTT CTCGGAAATC
GTCCGCGCCG CCGTGCGCCC CGGCGAAGCG CAAAGGCTGC TCCAATGCGT GTTCACCCAT
GTCGGGGTCG ATGAGGGCTT CCAGGGCGAT CTGGCCAGCG CCCTGGCCGT GGCGCAAGAC
CGGCCGGTTC CCTTCCTGCT GCGTCCCCAG GAGGGCGAGG CGGCGCTTGC CCTGACCTTC
GTCGAAGGCG GGGGAGGCGC CCGCCTTGAT CTGGCCATCG ACGATGGCGC CGTCGCCGCC
GCCATCGGTC AGGCCCTGCC GACGATGATC GGGAATTTGG CCACCGCCCT GGCCGAGGCG
CCCCATCTGC CGCTGTCGGG GGTGCCGGCG ATGGCCGCGT CGGTCCTTGA GCGCATGGGT
CAATGGGAAA GCGGCCCGCG CGCCGCCCTC GCCCTGCGCG AGGAGGGCTG GTCGCTGGGC
GCGCTGTTCG TCCGCGCCGT CCGCGACCAC GCCGCCCGCG TCGCCCTTGA GGCGGGGCGG
ACGCGCTGGA CCTATGACGT CCTGGGCGGG CAGGTCGCGG CGATCGCCAG CCAGTTGCAG
GACCTGGACC TGCGGCCGGG CGATGTCGTC GCCCTGCATA TGGCGGCGGG CCCGCTGTGG
GTGGCCTGCC TGCTGGCCAC GCTGGTTCGC GGCCTGTCGT TTCTGACCCT CGATCCCAGC
CACCCGGCCG AACGCAATCA CGCCCTGCTC GAAGGCGCAC GGGCCAAGGT CGTGATGGCC
GCCCCGGGCC TCCCCCCGCT CGCCGAGCTG CCGACCCTGG TCCCGGCCGA CCCCGATGCT
CGCACTCCGG CCTTGTCGAC CCTGCTGGTT GCCCTGAGCG AGGTCGACGC CACCCCGGCC
TATGTCATCT TCACCTCGGG CTCGACCGGC AAGCCCAAGG GCGTGGTCGT CGCCCAGGGC
GGGCTGCGCG ACCGCTTGCT GTGGAAAATC GAAGCCCTTG ACCTCGGCCC CGGCGAGCGG
GTCTTGCAAA GCATGCAGAC CATCTTCGAT CCCGCCTTGT GGGAGACCCT GGCGCCGCTG
CTCGCCGGCT CCACCCTGGT CATCGCCGAT CCCGAGGTGC GTTCCTCGCC CCGCCGGCTC
GCCGAGACCC TGCTATCGGC CAAGATCACC GTCGCCACCT GCATTTCCGG CATGGTGGGC
CCCTTGGGGC AGGCTCTGGC GGGTCTGGGA GGCAAGGGCG ATGATCTGGC GCTCCGCCGC
ATCGTCGCCG GCGGCGAGGC CCTGCCCAAC GCCGTCGCCC GCGCCTTCGT CGAGCAGACC
GGCGCCCGCA TCGAGCATTT CTATGGCCCG ACCGAGGCGA CGATCTTCTG CACCCATCAG
GGGGTCGGCC CCGCCGACAC CTTGCCCGAG GACGGCATCC TGCCCATCGG CCGACCGGTC
GCCGGGGCGC GGGTGGCGAT CGTCGATCTC ACCGGCGCCC CCTGCCCGCC CGGCGTCATC
GGCATGGTAG ACCTGTCGGG CATCGGTCTG GCTTTGGGAT ATCTTGGCGC CGATGGCGCG
GTGATCGGCA CGGGCGGCGG CTTCCGTCAG CACGGCGAGA GCCGGGTCTA CGCCTCGGGC
GACCTGGGGC GATGGCGATC GGATGGCCGG ATCGAGGTGC TGGGCCGCCA GGATACCCAG
GTCAAGATCC GCGGGGTTCG CATCGACCTT GCCGAGGTCG AAGCGGTGCT GCTTGCCCAT
TCCCTGGTCG GCGAGGCCGC CGTCATCGCC GCCAAACGCG CCGGGGTCAG CACCCTGCAC
GCCTTCGTGA CCGGCGACCA GGACATCGAT AGCGAGGCTT TACGCAAGGA TCTGGCCGGC
CGCCTGCCGC CGGCGATGCG GCCGACGACG CTGCGCGCGG TGTCGGGATT GCCCCGCCTG
GCCAATGGCA AGATCGATCG CGCCGCCCTC GACCGCCAGA TCCCCGAGGC GACCGGCCCC
GCCCTGCCCG CCGCCACCGC GCCGCTGGGA CCGCAGGAAC CGCTGGAGGC CACCTTGTTG
CGCTGCTGGC AACAGGTGCT CGCCCAACCC GACCTGGGGG TGACCGACGA TCTGTTCGAA
CGCGGCGGTC ATTCGCTGCT GGCCTTGCGC GTCTGCGCCA TGGTGGAAGA CATCAGCGCC
CGGGTCATCG CCCTTGATCC CTTGCTGCGC AATGTCAGCG TCCGCGAGCA GGCGCGCGCC
ATCCTGGCGG GCAATAGCGG CCGGGATGAC AAGGCGCCCA CCCTGACCCG GCTGTCGACC
ACCGCCAGCG GCCCGGATTT CGTTTGCATC GCCGCCGGCT TTGGCGACCT GCGCCGCCTC
AAGGCCCTGG CCGACGCCCT GGGCCCCCGG GCCAATGTCT GGGGGTTGTT CCCCCCCGCC
CTGCTTTCGG CCGGCCCGGC CGGATTGGCC GAGCTGATCG CCGCCTATCG CCAGATTTTG
CTCCAGCGCT TCGGCGCCCG GCCCTTCGCT TTGGCCGGCT TCTCGGTGGG CGGGGTCATC
GGCCTGGAAC TGGCCGCCAC CCTGCGAGCC GAGGGGCTGG CCATCGACCA TCTGGTACTG
CTTGATTCGG TCTTCCCCTT CCTGATGAAG CTCAACCTAA GGCTCCACGA CCTGCTGCGC
GCCATGGTGA CCTTCCGCTG GACCAACCGC CTGATGCGCT TCGCCTTCGG CCGCAGGCTG
CGGCGGTTCT TCATGGACGA GGGGTTGTCG GCCCACCTGA AGGCGGCGGC CTATTGCCGC
CAAAAATTCG GTGGCACGGT GACGGTGGTC CGCTCGCGCG CCGCCCGTCC GTTCTCGGCG
GTGCTGTTCT GGCCCTGGCG GCTGCGGGCC AAGCGGCTGG CCTGGGAAGA CGCCAGCGGC
TTCCACGGCA GCATGTTCTC GGCCGACCAT GTCGGCTCGC TGGCCGAAGC GGTCGCCCGC
CTCAACGCCG CAACCTCCCT TCCCCCCCCT CCCCCACCCC TGCCCCCCCG GGCCTTGCCG
GTGTGA
 
Protein sequence
MPAPRWATMG AMLLDRAASL EESCAYRFLH DGGGGPEVRS YRALTSRALD IATFLLAKGC 
AKRPVLILLP TGMAFVEALF GCFLAGAIAV PAPPPTGTRG LPRIRGILAD CAPPLALVVE
PPQIDRLGGG DDAPLARTEW VRVADIPACA TPDPSMVEAV APGDIAVLQY TSGSTGTPKG
VVISHRNALI NLAQQKSGMR APDGARLVSW LPVHHDMGLF GNILITVAVG GELSFMAPSS
FLQKPIRWVQ AISDYRGQAS GGPDFGFDLC ARRAQPADLA ALDLSSWTTA YSGAEPVRAA
TLERFARVFA ASGFRCEALR PCYGLAEATL IVSVQAVTQS LDVRRYDRQS LFAGIARQSD
DGEALTSCGP AVEGMEIAIV DAATSQPLPD NRVGEIWLSG PNLAEGYWNQ PQMTAKRFGA
RLAGRGDRWL RSGDVGFLDR GQLFVVGRAD DMIILRGRNI PPDDIENAAL VSPIQVAGSA
VALAAPDEGG VILVQEVARG QGARDFPLLG AQMRAAVADA TETALSRIAF VRFGSIPRTT
SGKIRRRETG LLLARDALPI VHDDRGGRPA EGEEAGPAPA SADPQTPPLE RLRLEAARLL
GLEKPPMADT PLVALGIDSL RAAELADWVA ETFGTSLPLS TFFTETATLA EIARAIGSSP
QSGGLALFPP PAAVARDVVP LTRGQQTLWV AARRAPESVG NTLSLGVVVG ETPPQTLQSA
LDRLSLAHPL LRSVFRLREN DPVRVVHAQP EVTIAPIVWH GEDEGREEAL DAFLRQPLVL
EDGPPWRAGL LRNGRSTLLV LALHHILADG RALVLLGKAL AAEIDAGTTA APDDAPAADR
FAEAVGEEEA YLCRPEAWRA LTFFRQSLAD LPDPLPLAPA GWDGRPAPRP RIVSLPISPS
RLAGLKRSAA VLGSPPARLM FGLFVLALAR LTSRDDLVVS VVSTNRPAGQ AMTIGYFANP
LPVRLHLGLE ATAPLDRVLI QAMAALSTTL DHRLLPFSEI VRAAVRPGEA QRLLQCVFTH
VGVDEGFQGD LASALAVAQD RPVPFLLRPQ EGEAALALTF VEGGGGARLD LAIDDGAVAA
AIGQALPTMI GNLATALAEA PHLPLSGVPA MAASVLERMG QWESGPRAAL ALREEGWSLG
ALFVRAVRDH AARVALEAGR TRWTYDVLGG QVAAIASQLQ DLDLRPGDVV ALHMAAGPLW
VACLLATLVR GLSFLTLDPS HPAERNHALL EGARAKVVMA APGLPPLAEL PTLVPADPDA
RTPALSTLLV ALSEVDATPA YVIFTSGSTG KPKGVVVAQG GLRDRLLWKI EALDLGPGER
VLQSMQTIFD PALWETLAPL LAGSTLVIAD PEVRSSPRRL AETLLSAKIT VATCISGMVG
PLGQALAGLG GKGDDLALRR IVAGGEALPN AVARAFVEQT GARIEHFYGP TEATIFCTHQ
GVGPADTLPE DGILPIGRPV AGARVAIVDL TGAPCPPGVI GMVDLSGIGL ALGYLGADGA
VIGTGGGFRQ HGESRVYASG DLGRWRSDGR IEVLGRQDTQ VKIRGVRIDL AEVEAVLLAH
SLVGEAAVIA AKRAGVSTLH AFVTGDQDID SEALRKDLAG RLPPAMRPTT LRAVSGLPRL
ANGKIDRAAL DRQIPEATGP ALPAATAPLG PQEPLEATLL RCWQQVLAQP DLGVTDDLFE
RGGHSLLALR VCAMVEDISA RVIALDPLLR NVSVREQARA ILAGNSGRDD KAPTLTRLST
TASGPDFVCI AAGFGDLRRL KALADALGPR ANVWGLFPPA LLSAGPAGLA ELIAAYRQIL
LQRFGARPFA LAGFSVGGVI GLELAATLRA EGLAIDHLVL LDSVFPFLMK LNLRLHDLLR
AMVTFRWTNR LMRFAFGRRL RRFFMDEGLS AHLKAAAYCR QKFGGTVTVV RSRAARPFSA
VLFWPWRLRA KRLAWEDASG FHGSMFSADH VGSLAEAVAR LNAATSLPPP PPPLPPRALP
V