| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A2926 |
|---|
| Symbol | |
|---|
| ID | 3836367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 3368729 |
|---|
| End bp | 3370147 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637827038 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT |
|---|
| Protein accession | YP_428010 |
|---|
| Protein GI | 83594258 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTTC CTAGTTTGTC CGTGCTGATC CTGACCCTGT CGGCCTGCTC CCTCATTCCG
CCGTTGGAGA CGCCCAAACC GCCGGTTCCG CCGGTCTTCC CTCAGAGCGA TGGGGTGGCC
GAGGGCGCGG GCGTGGCCGG ATTGCCCCTT GCCGGGCTGG TCCGCGACCC CCGCTTGCTG
CGGATCGTCG ATCTGGCCCT GGAGAACAAC CGCGACCTGC GGCTGGCCCT TCTCAATGTC
GAGGAGGCCC GGTCGCAATA TGGCGTTCAA GACGCGGATA CCTTGCCCGG CGTCGACACC
CAGGCCTCCT ACAGCCGCGA ACGGACCCCC GGTTCCGGGG GCAGATCGGC GACGGTCGCC
GATCAGCATG GGATGACCTT GGGCTTGAAC GCCTTCGAGA TCGACTTGTT CGGTCGCGTC
CGCGCCCTTT CCGCCGCCGC CCTGGAGCGC TATCTCGCCA GCGGCGAGGG CTACCGGGCG
GCGCGCCTCA CCTTGGTCGG GGCGGTTGCC GACGCCTATT TCGCCGAGCG GCTGGCCGTT
GAACAACGCG CCCTCGCCGA ACGGACCTTG GCCGATTGGC GTCAATCCCT GGAACTGGCG
CGCGATCTCC GGCGCAGTGG GCAGAGCGGC GAGGGGGATA TGGTCCAGGC CGAGGCTCAG
GTGGCTTTGG CCGAGGCCGA TCTCCGGTCG CGGGAACGGG CCGTTTCCCA GGCCGGCAAC
GCCCTTCGCC TCGTCGTCGG AACCGATCTT CCCGCCGATC TGCCCGCCGC TTTGCGCCTG
GACGAGCAAC CGGTGACGAC ACGGCTGCCC GCCGGTCTTC CGTCCGATCT TTTGTTGAAC
CGGCCCGACA TCCGCCAAGC GGAGCGGACT CTCGCCGCCG CCAACGCCGA TGTCGGCGCC
GCCCGGGCCG CGTTCTTCCC CCGACTCTCG CTTACCGCCG CCTTCGGCTT CGCCTCGCCG
ACCCTGGGGG CGCTGTTTCA GTCTTCGCAC AACGCCTGGA ACGTCTCCCC CCGTCTGGTT
TTGCCGATTT TTGACGGTGG GCGGCTTGAT GCCGAATTGG ATTTGGCGAA GGCCCGGGAA
AAAGAGGCGG TCGCCCACTA CGAAAAGGCG ATCCAGACCG CCTTTCGCGA AGTCGCCGAT
GGTCTTGCCG GAAGCGCCAC GCTCGACAGA CAGATCGAGG CGCAGAGCCG AAGCGTCGCG
GGGACGGCGC GCGCCGTCGC CTTGGCCGAG GCGCGCTATC GCGCCGGGCT GGAGGGCCGG
CTGGCCTTGC TTGATGCCCA ACGCCAGCTT CAAGCCGGTC AACAGACCCT GCTAAGCTTG
CGCCGCGAGG AAATCGCCAA CGCCGTGGCC CTCTACAAGG CCTTGGGCGG CGGATCGACC
GACGTCCGAG CGCCGGGAAT GGGCGGGCCG GTCCAATGA
|
|---|
| Protein sequence | MRLPSLSVLI LTLSACSLIP PLETPKPPVP PVFPQSDGVA EGAGVAGLPL AGLVRDPRLL
RIVDLALENN RDLRLALLNV EEARSQYGVQ DADTLPGVDT QASYSRERTP GSGGRSATVA
DQHGMTLGLN AFEIDLFGRV RALSAAALER YLASGEGYRA ARLTLVGAVA DAYFAERLAV
EQRALAERTL ADWRQSLELA RDLRRSGQSG EGDMVQAEAQ VALAEADLRS RERAVSQAGN
ALRLVVGTDL PADLPAALRL DEQPVTTRLP AGLPSDLLLN RPDIRQAERT LAAANADVGA
ARAAFFPRLS LTAAFGFASP TLGALFQSSH NAWNVSPRLV LPIFDGGRLD AELDLAKARE
KEAVAHYEKA IQTAFREVAD GLAGSATLDR QIEAQSRSVA GTARAVALAE ARYRAGLEGR
LALLDAQRQL QAGQQTLLSL RREEIANAVA LYKALGGGST DVRAPGMGGP VQ
|
|---|
| |