| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A2882 |
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| Symbol | |
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| ID | 3836323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 3322342 |
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| End bp | 3324432 |
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| Gene Length | 2091 bp |
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| Protein Length | 696 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637826994 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_427966 |
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| Protein GI | 83594214 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.129916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGACCA AGGCGACCAA CACGGCGGAA GCGGTGAACA CCCAGGAAGA GGGCGGCGAT
AGCCCCTTGC TTGATTCGAT GAACGCCGCC GTCAAGAAAT TGGTCAACCG GGGCAAAGAC
CGGGGTTACA TCACCTACGA CGAACTCAAT AACGCTCTGC CCCCAGACGA TGTGTCCTCC
GAGCAGATCG AGGACACCAT GGCCATGCTT TCCGATATGG GAATCAACGT CGTCGAGGAC
GAGGAAGAGG GCGAGGCCAG CGCCGCCCCC CCGGCCGAGG CCGGCGAGGA GGAACCCGGC
CGCGAAGTCG CCGCGACCGG CAATGTCAGT GAAGACGATA TCGGCCGGAC CGACGATCCG
GTGCGCATGT ATCTGCGCGA GATGGGCTCG GTCGAACTGC TGTCGCGCGA GGGCGAAATC
GCCATCGCCA AGCGGATCGA AGCCGGCCGC GAGATGATGA TCGGCGGCAT CTGCGAAAGC
CCGCTGACCA TCCGCGCCCT GCTGCAATGG CACGACGCCC TGGTCGATGG CCGCATGCTG
CTGCGCGACA TCATCGATCT CGACGCCACC TATGGCTCGG GCGCCGGTCC CGACGTGGTG
GCCGAAGGCC TGGAAGACTC GGTGGTGCCG CTGTCGCCGT TGGCCCTGTC TCCGGCCCGC
GCCCTTCCCA AAGAGGCCGA CGAGGCCGAA GAGGCCGTGA CGCCCGGGCG CGATGACGAC
TCCGAAGATG AGGACGAGGG CGACGACGCC AAGCCCGCCG ATGGGGCGGG CGACGAGGAG
GCCGCGCCGA GCGGCGAGGA CGAGGGCGAC GGCAGCGAGA ACAACGTGTC CCTCGCCGCC
ATGGAACAGG AGCTGATGCC CCGGGTTCTG GAAACCTTCG AGCATATCGC CACCACCTAT
GGCAAGCTGA AGAAGGCCCA GGATCAGCGC ATCGCCGCCT TGCAAAAGGG CGAGGAGCCG
GGCGCGGCGC TGGAGCGCAA ATACGACAAG CTGAAGCTGG AGCTGGTCGG GCTGATGGAG
GATGTCCATC TGAACAACGC CCGCATCGAG CAGCTGGTCG AGCAGCTCAA CGCGCTGAAC
AAGGGCCTGA TCACCCAGGA AGGCAAGCTG CTGCGTCTGG CCGAACGGGC CAAGATCCGC
CGCGATGAAT TCCTTGATCA CTACTTCGGC CGCGAGATGG ACCCGAGCTG GCGCGAGGAT
GTCGCCGCGC TGCCGGGCAA GGGCTGGCGC GATTTCACCA CGCGCTTCGC CGATGAGATC
AAGGATATCC GGGGCTCGAT CGCCGAGATC GCCGAGCGCT CCTTGCTGCC CATCCCCGAG
TTCCGCCGCA TCGTGTCGAC GGTGCAGAAG GGCGAGCGCG AGGCCAGCCG GGCCAAGAAG
GAGATGATCG AAGCCAACCT GCGCCTCGTC ATCTCGATCG CCAAGAAATA CACCAACCGC
GGTCTGCAGT TCCTCGACCT GATTCAGGAA GGCAACATCG GCCTGATGAA GGCGGTTGAT
AAGTTCGAAT ACCGCCGGGG CTACAAGTTC TCGACCTATG CCACGTGGTG GATCAGACAG
GCGATCACCC GCTCGATCGC CGATCAGGCC CGCACCATCC GCATTCCGGT GCATATGATC
GAGACGATCA ACAAGCTGGT CCGCACCTCG CGCCAGATGC TCCACGAGAT CGGCCGCGAG
CCGACCCCCG AGGAACTGGC CGAAAAGCTT CAGATGCCCT TGGAGAAAGT GCGCAAGGTT
CTGAAGATCG CCAAGGAGCC GATCAGCCTG GAAACGCCGA TCGGCGACGA GGAAGACAGC
CACCTGGGCG ATTTCATCGA GGACAAGAAC GCCGTTCAGC CTTTGGACGC GGCGATCAAC
TCGAACCTGC GCGAAACCTG CACCCGGGTG CTGGCCAGCC TGACACCACG CGAGGAGCGC
GTGCTGCGCA TGCGCTTTGG CATCGGCATG AACACCGACC ACACCCTGGA AGAGGTGGGC
CAGCAGTTCA GCGTGACCCG CGAGCGTATC CGCCAGATCG AAGCCAAGGC CCTGCGCAAG
CTCAAGCATC CCTCGCGCTC GCGCAAGCTG CGCTCTTTCC TCGACAACTG A
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| Protein sequence | MATKATNTAE AVNTQEEGGD SPLLDSMNAA VKKLVNRGKD RGYITYDELN NALPPDDVSS
EQIEDTMAML SDMGINVVED EEEGEASAAP PAEAGEEEPG REVAATGNVS EDDIGRTDDP
VRMYLREMGS VELLSREGEI AIAKRIEAGR EMMIGGICES PLTIRALLQW HDALVDGRML
LRDIIDLDAT YGSGAGPDVV AEGLEDSVVP LSPLALSPAR ALPKEADEAE EAVTPGRDDD
SEDEDEGDDA KPADGAGDEE AAPSGEDEGD GSENNVSLAA MEQELMPRVL ETFEHIATTY
GKLKKAQDQR IAALQKGEEP GAALERKYDK LKLELVGLME DVHLNNARIE QLVEQLNALN
KGLITQEGKL LRLAERAKIR RDEFLDHYFG REMDPSWRED VAALPGKGWR DFTTRFADEI
KDIRGSIAEI AERSLLPIPE FRRIVSTVQK GEREASRAKK EMIEANLRLV ISIAKKYTNR
GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI
ETINKLVRTS RQMLHEIGRE PTPEELAEKL QMPLEKVRKV LKIAKEPISL ETPIGDEEDS
HLGDFIEDKN AVQPLDAAIN SNLRETCTRV LASLTPREER VLRMRFGIGM NTDHTLEEVG
QQFSVTRERI RQIEAKALRK LKHPSRSRKL RSFLDN
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