Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_A2868 |
Symbol | |
ID | 3836308 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007643 |
Strand | + |
Start bp | 3302940 |
End bp | 3304607 |
Gene Length | 1668 bp |
Protein Length | 555 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637826979 |
Product | diguanylate cyclase |
Protein accession | YP_427952 |
Protein GI | 83594200 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTTTCG GCTCATGGAG CTTACGCGCC CAGGTCGGGT TGGTTTTCGG CTCGTTGGTT ACCCTTGTCT GCACCGTTCT CGTCTGGACC TCCAACACCG TCCTTGAAGC CAAGGGCGAA GAGGCCATCG GGGTTCAGTT ATCGTCCATT GCGTCGAACA TGGCCGATAA GTTCGACCGC GGCATGATGT CGCGGATTTC CGAAATCGCT TTCGTCTCTA GCCTCGACTT GTTCCGCAAT CCCTCGAATC CGCGCGCCAT CCGCCATACC CTCGACGATT TGCAAGAGGC CGTGCCCTAT TTCACCTGGA TCGGCTTCAC CGATCCGACG GGAACCGTCA GGGCCGGCAC CAATGGCCTG CTCGAGGGCG CCGACTTCAG CCAACGCGCG GTGTTTCAGC AAGGCATCCA GGGTCCCTTC ACCGGCAACC TCCACGAGGC GCCGATGCTC GCCAAGGCTT TGGGGGCGTC GGGCGCCGAA CCCATGCGCT TTCTCGACAT CACCTTTCCC GTGACCGATC TCGCCGGCGC GGTGGTCGGC ATGCTGAGCG CCCATATCGA CTGGGCCTGG GCCCGCGAAC TCGAACACGC GGCCCTTGAA AGCGCCCTCA GTCGCCAGGG GTTGGAGCTC TTGGTCGTTG ATCATGCGGG AACGGTGTTG CTGCGTCCCG AAGGCCTCGC CCTACCCAAG ACGCTCGACC TCGAGGCCCT GCGCCACTCC CAAACCCGCC CCAAGGGTTG GACCATCGAG ACGTGGCCCG ACGGCAAGGT TTATCTGACC GGCTATGCCC GCCAGAGGGG CTACAAGGCC TTTGCCGGAT TTGGCTGGCG AATCCTCGCC CGTCAGCCCG TCGAGATCGC TTTCGCTCCC TTGGCCGAGG TGCGCCACAC CCTGCTGCTG GCCGGGGTGG TGGGCGGGGT AATCTTCGGG GCGATCGCCT GGATCACCGC CGGCGCCATC GCCCGGCCGC TCAAACGGAT CACCGAGGCC GCCGACGGCC TGCGCGACGG CGCGGTGGGC GCGGCCCTGC CCCATCTGAC CGGCAGCAAG GAGATCGAAC GGCTTTCCGA ATCCCTGCGC CTGCTGATCA ATGCCCTGAC CGCCACCGAC CGCCGCATGG GGCGGATGGA AAAGCTCGCC CATAACGACC TGTTGACCGG CCTGCCCAAT CGCGCCGCCC TTGGCGCCTA TCTCGACCGC GTCGTTCCCG CCCTCAGCAA CGCCCAGGCC GCCATCGCCT TCCTGTATCT TGATCTCGAC GGCTTCAAGG CGGTCAACGA CACCCTCGGC CACGGGGCGG GCGACGACCT GCTCAAGGCC GCCGCCGGCC GCATCCTCGA CTGCCTGCGC CAAGGCGACA TGGCGATACG CCTGGGGGGC GATGAATTCG TCGTCATCGT CAACACCTCG GCCTCAAGCT GGCGCCAGGA ATCGATCCGG GTCGCCGAAA GGCTCCTTAC CGCCCTCGAT GGTCCCTTCG CCTTGCCCGG CGGCGTCCGG GCGAAAATCG GCTGCAGCAT CGGCATCGCC GCCTGGCCCG ACGATCATTG CGACATCGAA GGCGCCCTTC ACCACGCCGA TATCGCCCTG TATCAGGCCA AACGCCTGGG AAAGGGCCAA TCGGTGGTCT ATGCCGACCT GCCGAAATCG GTCCTTCACG ACGGATAA
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Protein sequence | MAFGSWSLRA QVGLVFGSLV TLVCTVLVWT SNTVLEAKGE EAIGVQLSSI ASNMADKFDR GMMSRISEIA FVSSLDLFRN PSNPRAIRHT LDDLQEAVPY FTWIGFTDPT GTVRAGTNGL LEGADFSQRA VFQQGIQGPF TGNLHEAPML AKALGASGAE PMRFLDITFP VTDLAGAVVG MLSAHIDWAW ARELEHAALE SALSRQGLEL LVVDHAGTVL LRPEGLALPK TLDLEALRHS QTRPKGWTIE TWPDGKVYLT GYARQRGYKA FAGFGWRILA RQPVEIAFAP LAEVRHTLLL AGVVGGVIFG AIAWITAGAI ARPLKRITEA ADGLRDGAVG AALPHLTGSK EIERLSESLR LLINALTATD RRMGRMEKLA HNDLLTGLPN RAALGAYLDR VVPALSNAQA AIAFLYLDLD GFKAVNDTLG HGAGDDLLKA AAGRILDCLR QGDMAIRLGG DEFVVIVNTS ASSWRQESIR VAERLLTALD GPFALPGGVR AKIGCSIGIA AWPDDHCDIE GALHHADIAL YQAKRLGKGQ SVVYADLPKS VLHDG
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