Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_A2406 |
Symbol | |
ID | 3835840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007643 |
Strand | + |
Start bp | 2802329 |
End bp | 2806234 |
Gene Length | 3906 bp |
Protein Length | 1301 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637826514 |
Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_427493 |
Protein GI | 83593741 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCCCTT CGACGACAGA TGACGCGAGG CCGGACCTCC CCTCGGATCA GGCGGAGCGC CATCCCGAGG GAGGGGCCGA TTTCGAGGCG ATTTTCAGGG CGCTTCCGGG CCCCCATCTG ATTCTGGACG CGGACTTGAA GATCGCCGCC GTCAATGACG CCTACCTTCA GGCGACGCTG ACCCGTCGCG GCGAGATCCT TGGCCGGGGC ATATTCGAGG TCTTTCCCGA CAACCCCAAT GATCCGGTCA GCGAGGGCGT GCGCAATCTG CGGGCCTCGC TCCTGCGCGT CCTGTCAAGC CGGACCCAGG ATGTGATGTC CATTCAGAAG TATGACGTGC GCAAGCCGGG CGGCGGGGCG GGCGACTTCG AGCTGCGCTA TTGGAGTCCG ATCAATACCC CCGTGCTTGG CGCCGATGGC GCGGTCGTCT ACATCGTTCA CTATGCCCAG GATCTAACCG AATACTATGC TTCCTCCGGG CAACAGGATT TCGCCGAGGG CGGGAAGGAC GACATCGTCC GGCAGATGGA AGCGGAAATC TTTCAGCGCT CCAAAGAAGT CGCCAAATCA AACCTGAAAT TGAAGGAAGC CAATTCAGAA CTGGCGATCC TTTACGAAAA AACCCGCGAA CTCGATGATA TCAAAACCCA GTTCTTCGCC AACGTCAGCC ACGAGCTGCG CACCCCGCTG ACCTTGATCC TCGGGCCGGT CACCAGCCGT CAGGAGGACC CGACGCTCGC CCCGGCCGAA AAGCGGGTGC TTGATATGGT GGCGCGCAAT GCCCGACTGC TGCTCCGCCA CGTCAACGAC CTGCTTGATA TCGCTAAACT CGAAGCCGGG CAGATGCGGA TGCAATATGT CCGCACCGAT GTGACCCGGC TCTGCCGCTT CGCCCTGTCG CACTTCGACT CGTTGGCCGA GGAACGGGCC ATCGCCTTCA CCCTGGAGGC GCCCGCCGTC CTTTGGGCCG AGATCGATCC GGAAAAGTTC CGGCGGGTCC TGCTCAACCT TCTGTCCAAC GCCTTCAAAT TCACCCCCAA CCAGGGGGAG ATCACCGTGT CGCTGATCGA TCGCGGCGAT GATGTGATCT TGCGGGTGAG CGACAACGGG CCGGGGATTC CCGAAAGCAT GTGGACCGCC GTGTTCGAGC GCTTCCGCCA AGTCGATGGC GGCAGCGACC GCCGCCATGG CGGAACCGGG CTTGGTCTGG CCATCGTCAG GGAATTCGTC GATCTCCACG GCGGCGAGGT GAGCATCGGG CAGGCCTCGG AAGGCGGGGC GGCGTTCACC GTCGTCCTGC CCAAAAAGGC CCCGCCCGAC GTCGCGGTCT ATCCCGAAAT CGGCGACACC CTGGCCGAAG GCCCGGGGTT CTATCGTGAC ATCGATAAGG GGCTTGAGGG CGAGGACCGC CTGACGGACC TCGCCCCGTC TGCCGCCGCC AGCGGGCCCG CCAGCGGGCC CGCTGGCGGC GTCGGCATCA ACGCCCCGCT CGTTCTTGTC GTGGAGGACA ACCCCGACAT GAACGCCTTT GTCAGCGAGA TCGTCGCTGG ACACTATCGG GTGATCTCGG CCTTCGACGG CCAGGAGGGG CTGGAGAAGG CCCACGAAAC CCTGCCCGAT CTGATCATCA GCGATGTCAT GATGCCAAGG ATGAGCGGCG AGACCATGGC CGACACCCTG CGTCAGGATG GTCTGACCAG CGATATTCCG ATCATCATGC TCACCGCCAA AGCCGATGAG GCCATGCGCG CGCGCATGCT GCGCGGCGTG GTGCAGGACT ATCTGTTCAA ACCGTTTTCC CGCCTGGAAC TGCTGGCCCG CGCCGATGGG CTGATCGCCG ACCACCGCCG CAAGCAGATG GTATTGCGCG AGAGCGAAGC CCGCTTCCGC GCCACCTTCG AACAAGCCGC CGTCGGCATC GCCCATCTCG ATCCCGATGG CCATTGGCTG CGGGTGAACC ACAAGCTCTG CGATATCGTC GGCTATCCCC CCGACGAGTT GCTCACGCTC AGCTTCCAAG ACATCACCCA TCCCGATGAC CTGCGGGCCG ATCTTCGCCA GATGGAGGCC CTGCTCGCCG GCCAGATCGA CACCTATACC ATCGAAAAGC GCTACATCCG CAAAACGGGG GAAAGCCTGT GGATCAACCT GACCGTCTCC CTGGTGCGCG ACATCCATAA CGCCCCGGCC TATTTCATCT CGGTGGTCGA AAACATCCAA AGCCGCAAGG AGGCCGAACT TCAGTTGCTG CTGGCCTCGG CGGTGTTTTC CAACAGCATG GAGGGGATCT TCGTCACCGA CCTCAAAGGT TCGATCCTGG CGGTCAATCC GGCCTTCAGC CAGATCACCC TCTATGAAGC CGCCGAGGTT CTGGGGCGCA ACGCCCGCAT CTTGCAATCG GGTCGCCAAA ACCGCGAGTT CTATGTCGCC TTGTGGCAAG ACGTCCTGAC CATCGGATCC TGGCGCGGGG AAATCTGGAA CCGCCGCCGC GATGGCGAGG TTTTCCCCGA ATGGCTCAGC ATCAGCTCGG TGCGCAACCA TCAGGGCGAA GTCACCAATT ACATCGGCAT TTTCTCCGAT CTGTCGCGGA TCAAGCATTC CGAAGCCAAA TTCCACCACC TCGCCCACCA CGATCCGCTA ACCGGCCTGC CTAACCGCCT GCTGTTGCGC AGCCGCCTCG ATCACGCGAT CGAACGGGCG CGGCGCACCG GCGGGCGGTG CGCCGTGTTG TTTCTCGACC TTGACCGCTT CAAGATGATC AACGACAGCC TGGGTCACCG GGCAGGTGAT ACCTTGCTGC GCACCCTGGG GGCGCGCCTG ACCGCCTGCC TGGGCGATAC CGGCACCCTC GCCCGCCTGG GCGGCGATGA ATTCGTCGCG GTGATTGAAG ACATCGATGG CATCCCGGCC GTCGGCACGA TCGCCCTCAC CATGCTCGAG CGCCTGCGCG AACCCTGCCG GTTGAGCGAA GGCCCCGAGG TTTGCATCGG CGGCAGCGTT GGCATCAGCC TATTCCCCGA AGACGGCGAC AACCCCGATA CCTTGCTCCA ACATGCCGAT ACCGCGCTGG GCCAGGTCAA AGGCGCCGGA GGGGGGGCTT ATGGATTTTA CACCCGGACC TTGACCGAAC GGATCTCCGC CCGCCTTGGC CTGGAGGCCG GATTGCGCCA CGCCTTGGAA CAGGGGGATT TTCTCCTCCA CTACCAACCC TTGATCGCGC TGGGGACCGG CGAGGTCGAA GGGGTGGAGG CGCTGGTCCG CTGGGCGGGC GGCGACGGCC TGCTTATTCC CCCCGACCGC TTTATTCCCC TGGCCGAAGA CACCGGGTTG ATCGTTCCCT TGGGCGAATG GGTGCTCGGG GAAGCCTGCC GAACCATGCA GCGCTGGCGC AGCCAGGGCA TGCCCCTGAC GGTGCTGGCC GTCAATCTGT CACCCCGCCA GTTCCGCGAC CACGCCATTC CCGCCCTGGT CCGCCGGGTC CTTGAACAAA CCGGCTTGCC GGCCAGCGTC CTTGAGCTGG AAATCACCGA AAGCGCCATC ATGGAACAAG GTGCCGCCGC CGAGGCCCAG ATGACCGGGC TTAAGCACTT GGGCGTGCGG CTGGCGATCG ATGATTTCGG CACCGGCTAT TCGTCGCTGG CCAACCTCCG CCGCTTCCCC ATCGATAAGA TCAAGATCGA CCAAAGCTTC GTGCGCGATA TCCCGCGCGA TGCCGCCGCC GAAGAGATCA CCGCGACGAT CATCGCCATG GGGCGCACGC TCAAGCTCCA TGTCCTGGCC GAAGGGGTGG AAACCACCGA TCAGCTTGAT TTCCTGTCGC GCAAGCAATG CGACAGCGCC CAGGGCTATC TGTTCAGCCG GCCGATCACC GCCGCCGCCC TGGAAAAGTG GCTCGCCCTA CGCTGA
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Protein sequence | MIPSTTDDAR PDLPSDQAER HPEGGADFEA IFRALPGPHL ILDADLKIAA VNDAYLQATL TRRGEILGRG IFEVFPDNPN DPVSEGVRNL RASLLRVLSS RTQDVMSIQK YDVRKPGGGA GDFELRYWSP INTPVLGADG AVVYIVHYAQ DLTEYYASSG QQDFAEGGKD DIVRQMEAEI FQRSKEVAKS NLKLKEANSE LAILYEKTRE LDDIKTQFFA NVSHELRTPL TLILGPVTSR QEDPTLAPAE KRVLDMVARN ARLLLRHVND LLDIAKLEAG QMRMQYVRTD VTRLCRFALS HFDSLAEERA IAFTLEAPAV LWAEIDPEKF RRVLLNLLSN AFKFTPNQGE ITVSLIDRGD DVILRVSDNG PGIPESMWTA VFERFRQVDG GSDRRHGGTG LGLAIVREFV DLHGGEVSIG QASEGGAAFT VVLPKKAPPD VAVYPEIGDT LAEGPGFYRD IDKGLEGEDR LTDLAPSAAA SGPASGPAGG VGINAPLVLV VEDNPDMNAF VSEIVAGHYR VISAFDGQEG LEKAHETLPD LIISDVMMPR MSGETMADTL RQDGLTSDIP IIMLTAKADE AMRARMLRGV VQDYLFKPFS RLELLARADG LIADHRRKQM VLRESEARFR ATFEQAAVGI AHLDPDGHWL RVNHKLCDIV GYPPDELLTL SFQDITHPDD LRADLRQMEA LLAGQIDTYT IEKRYIRKTG ESLWINLTVS LVRDIHNAPA YFISVVENIQ SRKEAELQLL LASAVFSNSM EGIFVTDLKG SILAVNPAFS QITLYEAAEV LGRNARILQS GRQNREFYVA LWQDVLTIGS WRGEIWNRRR DGEVFPEWLS ISSVRNHQGE VTNYIGIFSD LSRIKHSEAK FHHLAHHDPL TGLPNRLLLR SRLDHAIERA RRTGGRCAVL FLDLDRFKMI NDSLGHRAGD TLLRTLGARL TACLGDTGTL ARLGGDEFVA VIEDIDGIPA VGTIALTMLE RLREPCRLSE GPEVCIGGSV GISLFPEDGD NPDTLLQHAD TALGQVKGAG GGAYGFYTRT LTERISARLG LEAGLRHALE QGDFLLHYQP LIALGTGEVE GVEALVRWAG GDGLLIPPDR FIPLAEDTGL IVPLGEWVLG EACRTMQRWR SQGMPLTVLA VNLSPRQFRD HAIPALVRRV LEQTGLPASV LELEITESAI MEQGAAAEAQ MTGLKHLGVR LAIDDFGTGY SSLANLRRFP IDKIKIDQSF VRDIPRDAAA EEITATIIAM GRTLKLHVLA EGVETTDQLD FLSRKQCDSA QGYLFSRPIT AAALEKWLAL R
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