| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A2237 |
|---|
| Symbol | |
|---|
| ID | 3835665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 2597699 |
|---|
| End bp | 2598982 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637826339 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_427324 |
|---|
| Protein GI | 83593572 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACCC TGTCGCTGTT TGCCGTGTTC CTGGGCTTGA CGCTTCTTGG CGCGCCGCTG
GCCGTCGCCC TGGGCCTTGC CGGATCGGTG GCGATCCTCG AGGCCCAGCT TGGCATTCTT
TCAGTGCCGA CCACGGTGTA TGCGGGCATC GCCAAATATC CGCTGCTGGC GATCCCGGTG
TTCATTCTGG CCGGCCTGAT CTTCGAGCGC GTCGGGGTGG CCCGCCAGTT GGTCTCCTTC
GCCTCGTCGA TCGTTGGGGC GCGCAACGGC GGCTTGGCCA TCGTCGCCGT TCTGGTCTGC
ATGGTCATGG GCGGCATTTC GGGATCGGGT CCGGCCGATG CGGCGGCGGT CGCCACGGTG
ATGATCCCCA GCCTTCACAA GGCCGGCTAT CCCAAGGCCT TTTCGGCCAG CGTCATCGCC
GCCGGGGCGG CGACGGCCAT TCTGATCCCG CCCTCGGTCG CCTTCATCAT TTATAGCGTT
CTCGTCCCCC AGGCCTCGGT TCCGGCGCTG TTCGCCGGCG GCTTGATCCC CGGCCTGCTC
GCCGGGCTGT CGTTGCTGGC ACCGATCGTT TATCTGTCGC GCCGTCATGG CTTCGGCATG
GCCGACAGCG GCCCGCGACC GGGCTTCTGG GTCAGCCTCA AGGGGGCGAT CTGGGGGCTG
CTCGCTCCGG TGATCATCCT GGGCGGCCTG CGGCTCGGTC TCTTCACCCC GACCGAAGCG
GCGGTGGTCG CCGTTTTCTA TGGGCTGTTC GTCGGCGTCT TCATCCTGCG CACGCTGTCG
GGACGGATGC TTATCGACAT GCTGGCCGAT GCCGCCGAGA TGTCGGGGGT GGTGCTGCTG
ATCATCGCCC TGGCCAGCGT TTTCGCCTGG GCCGGCAGTA CCTTGGGCGC TTTTGACGCC
GTGGCCGGAG CGGCGCTGCA GGCGACGGAC AACGAAGTCG TTGTCTTGTT GATGCTCAAC
CTTTTGCTGC TCGGCCTGGG AATGGTGCTG GACGCGGTTT CGATCTTCCT GATCTTGCTG
CCGCTGCTCG TTCCCTTCAT GGAAGCCTTC CACTGGGATC CGGTCTGGTT CGGGGTGATG
GTGACGATGA ACCTCGCCGT CGGCCAGTTC ACGCCGCCGA TGGCGGTCAA TCTGATGGTG
ACCACCCGCA TCGCCGGGGT CCGCATGGAG GCGGCGACCG GCTGGACGCT GTGGTTCGTG
GGCGCCATGA TCGTGGCGCT GATGGTCGTA ACCTTCGTGC CCGAACTCAC CCTGTGGCTG
CCGCGGGCTT TGGGCTATCT GTGA
|
|---|
| Protein sequence | MATLSLFAVF LGLTLLGAPL AVALGLAGSV AILEAQLGIL SVPTTVYAGI AKYPLLAIPV
FILAGLIFER VGVARQLVSF ASSIVGARNG GLAIVAVLVC MVMGGISGSG PADAAAVATV
MIPSLHKAGY PKAFSASVIA AGAATAILIP PSVAFIIYSV LVPQASVPAL FAGGLIPGLL
AGLSLLAPIV YLSRRHGFGM ADSGPRPGFW VSLKGAIWGL LAPVIILGGL RLGLFTPTEA
AVVAVFYGLF VGVFILRTLS GRMLIDMLAD AAEMSGVVLL IIALASVFAW AGSTLGAFDA
VAGAALQATD NEVVVLLMLN LLLLGLGMVL DAVSIFLILL PLLVPFMEAF HWDPVWFGVM
VTMNLAVGQF TPPMAVNLMV TTRIAGVRME AATGWTLWFV GAMIVALMVV TFVPELTLWL
PRALGYL
|
|---|
| |