| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A1954 |
|---|
| Symbol | |
|---|
| ID | 3835378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 2263279 |
|---|
| End bp | 2264181 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637826053 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_427041 |
|---|
| Protein GI | 83593289 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTGA AGCCTGTTCT CTCCCTGCTC GGCCGCTATG CCCTGACGCT TTGCCTCGTC
GCCGGCGCCA CCCTCATCGC GTGGGAAGCC TGGAGCCGCT CCGAGCGGAC TCCCTGGACA
CGCGACGGGC GGGTGAGCGC CGATGTCGTG CGGATCGCCC CGGAAGTCTC CGGCACCGTC
AGCGCCGTAC CCATTCGGGA TAATCAATAT GTCCATCGCG GGGACATTCT CTATGGGATC
GACCCCGAGC GGCTGCGGCT CGCGGTGGCG GTGGCGGAGG CCGACCTCGA AGCAAAGCGC
CAGGATATGC TCGTTCGTCA AGCGACGGCG CGGCGGCACG GTCAACTCCG CGATGTTGTA
TCACAAGAAG CCGTCCAGCA AGCGGGCGGA GCGGCGGCGG TGGCCAGCGC CGCCTATCAG
GCCGCGCTGG CCACCCTCGA TCTGGCCAAA CTCGACCTCG CCCGCGCGAC CGTGCGCTCG
CCGGTCGATG GCTATGTGAT CAATCTGCGG CTGCGGCCCG GCGACTACAC GACAGCCGGC
GTGACGACGG TCGCCGTCCT CGACGCCGCC CGATTCTGGA TCACCGGCTA TTTTGAGGAG
ACCAAGATCG GACAAATCCG CGTCGGCAGT CCGGCGCGGA TCAGGCTGAT GGGCTTTGAT
CGGCCGGTGT CGGGCCATGT CGAAAGCATC GGTCACGGTA TCGAGAACGG CAACGACGCG
CCCGGCCCTC TCGGCCTGCC CACTGTGGCG GCGACCTTTT CCTGGGTGCG TCTCGCCCAG
CGCATCCCGG TCCGCATCCA CGTCGATCAG GTGCCTCTTG ATGTCGCACT GGCGGCAGGC
ATGACGGCGA CCATCGAGAT CATCCCGGCG GCCGGCGAGC CGGCCGTGGG GAACCGGCGC
TGA
|
|---|
| Protein sequence | MTLKPVLSLL GRYALTLCLV AGATLIAWEA WSRSERTPWT RDGRVSADVV RIAPEVSGTV
SAVPIRDNQY VHRGDILYGI DPERLRLAVA VAEADLEAKR QDMLVRQATA RRHGQLRDVV
SQEAVQQAGG AAAVASAAYQ AALATLDLAK LDLARATVRS PVDGYVINLR LRPGDYTTAG
VTTVAVLDAA RFWITGYFEE TKIGQIRVGS PARIRLMGFD RPVSGHVESI GHGIENGNDA
PGPLGLPTVA ATFSWVRLAQ RIPVRIHVDQ VPLDVALAAG MTATIEIIPA AGEPAVGNRR
|
|---|
| |