Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_A1805 |
Symbol | |
ID | 3835229 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007643 |
Strand | - |
Start bp | 2100994 |
End bp | 2103654 |
Gene Length | 2661 bp |
Protein Length | 886 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637825904 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_426892 |
Protein GI | 83593140 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCTTCG AGGACCCGTC TTTCTGGGCC GCCCTGTTGA CCGCCGCCAC GACGGCGGGC GCGATTACCA TTCTGGTCGC CCTGGTGCGG CGCAATCAGG CGAAAGGCCC CGACCGACGG GCCAGGGAAG ACGCCGAGAT TTTCTTGGGC CTCTCCGATG GGTTGATCGT GCTTGACGAC GGCGGCCGGG TCAGCGCCCT CAATCGCGCC GCCCAACGGA TGACCGGCCA GGAGGGCGAG GCCGCCGTCG GTAAGTCGGC CCGCCGGTTG CTTCCCGGTC TTGAGAGCGT GCTCGAGGGC AAGGACCGTC TGGCCTCCTC GCTGGGCCTA TGGTGCCGGC TGCCAGCGAC CGGCCGCGAG GAGGCCTTGG CGTCGACCCT TGGCGCCCTA CTGAGCGAGA CCACCGGGCC GGCGGGGACG CGCACGGTTC TGGTGCTGCG CGACATCAGC GAACAGATCC GCCTCACCGA GGTTGACGAC TGGCTGCGGG TCATCGACGG CCACCTTCTG GCCGGAACGT CGCTGGGCGA TCTCGCCAAT GATCTGTGCG AGCGGGTCGC CCGGGCTTTC GGATTGCCGT TGTTGTGGAT CGGCGTGCCC CGCCCCGAAG GCCTTCTTGT CGTTGGCAAA GGCGGCAGCG AGGCGGCGCG TTTGAGCGCC TATCCCGAGG GCAGGGGGGA CGAGGGAACC CAGGGGGTGG CCGGCCGCAC GCTGCGCTCG GGCCGGGCGC AGAGCGATGA TGCCGGCGAA GGCTGGGCGG CCCCGACCTG GGCGCCGGGC GTTCCCTTGG GGCGGGCCTA TTGTGTAGGG CTGCGCGCGC GCGGCGAGGT GGTGGCGGTT TTGTGCCTGC GCGGCCATGG CGAGGCGCCC TCTCCCGCCC TGTCGCGCGC CCTGGAGGCC CTGGGCCCCC GTCTGGGCGA GGCCATCGTC TACGAGCGCG GCCAATCCCT GATGCGCCTG CAAAGCGCCG CCATCGCCGC CGCGGCCAAC GCCATCGTCA TCACCGATGG GGAAGGCCGG GTGGAATGGG TCAACGAGGC CTATCATCTG CTGTCGGGCT ACGAGCGCGA TCAGATCATC GGCACCCTCC CGGCCGTTCT CGCCGGGCCA TCGGCGGCGA ACCCGACGGC GATCGAAGCC TGGCCGACGC TGCGCGCCGG TCAGGTGTGG CGCGGGGAAA TCCACGAAAC CCACCGTGAC GGGCGGACCT ATATCGTTGA CAAGACGATC ACGCCGATCG TCGACGCTAG CGGCCGCCTC AGCCATCTGG TCGCCGTCGA TGAGGATGTG ACGGCGCGCA AGAAGGCCGA GGAACGCATC CGCTATCTAT CGAACTACGA TACCCTGACG CGGTTGCCCA ACCGCGTGCT GTTTCGCGAC CGGCTTTATC AGGCCGTCGT CCAGGCCCGG CGCGGCCATG GCGGTCTGGC GGTGATGTTC ATCGATCTTG ATCAGTTCAG TCTGGTCAAC GACACCTTGG GCCATGCCGC CGGCGATCAT CTGCTGATGA CCATCGCCTC GCGCATCAAT GCCGCCGCCG AGGAGGCCGA TACGGTGGCC CGGGTCGGCG GTGATGAATT CGCCCTGATC CAGACGGCGC TGACCAGCGC CGATTCCGCC GCCTCGCTGG CCCGCCGGCT GATCGACGTC ATCCGCACCC CCGTTGATCT CGGGGGGCGC GAAGTGGTGA TCGGCGCCAA TGTCGGCATC GCCATCTATC CCCAGGATGG CACCGATCCC GATAATCTGA TGAAGAACGC CGATATGGCG ATGTATCGGG CGGTCAAGTC GGGCGATGAC TCCTGCTGCT TCTTCTCCAA TGAAATGAAC GCCGAAGCCG CCGTTCGTCT CAGTTTGGAA GAAGATCTGC GCCGGGCGCT CGACTCGGGC GATCAGCTGT TCTTGCACTA CCAGCTGCAG TTCTGCATCG AAAGCGGCCG GCCGGTGGGG GCCGAAGCCC TGGCCCGCTG GACCCATCCG ACGCTTGGCG CCATTCCGCC CACCCGCTTC ATTCCGGTGG CCGAAGACAG CGGGCTGATC CTGGCCTTGG GCGATTGGGT GCTGGGAACC GCGCTCGCCG AATACGCCCG CTGGCGGGCG GCGGGCTGCG GCCGGCTGAC CATCGCCGTC AATATGTCGG CCGTGCAGTT CCGCCAGAAG GGGCTGGTCG AGCGGGTGAC CGACCTGCTC GCCCAGCATG GCGTGCCGCC CGAGGATCTG GAACTGGAGC TGACGGAAAG CATGCTGATG CAAGACGCCG ATCAGGCGGT CGCCCAATTG ACGGCGCTGT CGCAGGCCGG CATCCGCCTG TCGATCGACG ACTTCGGCAC CGGCTATTCC TCGCTGGGCT ATCTGAAGCT GTTCCGGGTC GATAAATTAA AGGTCGATCA ATCCTTCGTC CGCGACGTGA CCGAAGACGG CAACGACGCG GTGATCGCCC GCGCCATCAT CAACCTGGGC CACAGCCTGG GTCTCGAGGT CATCGCCGAG GGGGTGGAAA CGCCCGAGCA GATGGCCTAT CTGCGGCGCG AGGGCTGCGA TGTGGTTCAG GGCTACCTGA TGGCCTACCC CGAGCCCGGC GAAACGGTGG CCCGGCGCCT TCTCGCCCTC GACGCCTTAA GCGCGGCGCC GGCGGCCGTC GTCATGTCGC GTTCAGATTG A
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Protein sequence | MTFEDPSFWA ALLTAATTAG AITILVALVR RNQAKGPDRR AREDAEIFLG LSDGLIVLDD GGRVSALNRA AQRMTGQEGE AAVGKSARRL LPGLESVLEG KDRLASSLGL WCRLPATGRE EALASTLGAL LSETTGPAGT RTVLVLRDIS EQIRLTEVDD WLRVIDGHLL AGTSLGDLAN DLCERVARAF GLPLLWIGVP RPEGLLVVGK GGSEAARLSA YPEGRGDEGT QGVAGRTLRS GRAQSDDAGE GWAAPTWAPG VPLGRAYCVG LRARGEVVAV LCLRGHGEAP SPALSRALEA LGPRLGEAIV YERGQSLMRL QSAAIAAAAN AIVITDGEGR VEWVNEAYHL LSGYERDQII GTLPAVLAGP SAANPTAIEA WPTLRAGQVW RGEIHETHRD GRTYIVDKTI TPIVDASGRL SHLVAVDEDV TARKKAEERI RYLSNYDTLT RLPNRVLFRD RLYQAVVQAR RGHGGLAVMF IDLDQFSLVN DTLGHAAGDH LLMTIASRIN AAAEEADTVA RVGGDEFALI QTALTSADSA ASLARRLIDV IRTPVDLGGR EVVIGANVGI AIYPQDGTDP DNLMKNADMA MYRAVKSGDD SCCFFSNEMN AEAAVRLSLE EDLRRALDSG DQLFLHYQLQ FCIESGRPVG AEALARWTHP TLGAIPPTRF IPVAEDSGLI LALGDWVLGT ALAEYARWRA AGCGRLTIAV NMSAVQFRQK GLVERVTDLL AQHGVPPEDL ELELTESMLM QDADQAVAQL TALSQAGIRL SIDDFGTGYS SLGYLKLFRV DKLKVDQSFV RDVTEDGNDA VIARAIINLG HSLGLEVIAE GVETPEQMAY LRREGCDVVQ GYLMAYPEPG ETVARRLLAL DALSAAPAAV VMSRSD
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