| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A1805 |
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| Symbol | |
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| ID | 3835229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 2100994 |
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| End bp | 2103654 |
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| Gene Length | 2661 bp |
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| Protein Length | 886 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637825904 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_426892 |
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| Protein GI | 83593140 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTTCG AGGACCCGTC TTTCTGGGCC GCCCTGTTGA CCGCCGCCAC GACGGCGGGC
GCGATTACCA TTCTGGTCGC CCTGGTGCGG CGCAATCAGG CGAAAGGCCC CGACCGACGG
GCCAGGGAAG ACGCCGAGAT TTTCTTGGGC CTCTCCGATG GGTTGATCGT GCTTGACGAC
GGCGGCCGGG TCAGCGCCCT CAATCGCGCC GCCCAACGGA TGACCGGCCA GGAGGGCGAG
GCCGCCGTCG GTAAGTCGGC CCGCCGGTTG CTTCCCGGTC TTGAGAGCGT GCTCGAGGGC
AAGGACCGTC TGGCCTCCTC GCTGGGCCTA TGGTGCCGGC TGCCAGCGAC CGGCCGCGAG
GAGGCCTTGG CGTCGACCCT TGGCGCCCTA CTGAGCGAGA CCACCGGGCC GGCGGGGACG
CGCACGGTTC TGGTGCTGCG CGACATCAGC GAACAGATCC GCCTCACCGA GGTTGACGAC
TGGCTGCGGG TCATCGACGG CCACCTTCTG GCCGGAACGT CGCTGGGCGA TCTCGCCAAT
GATCTGTGCG AGCGGGTCGC CCGGGCTTTC GGATTGCCGT TGTTGTGGAT CGGCGTGCCC
CGCCCCGAAG GCCTTCTTGT CGTTGGCAAA GGCGGCAGCG AGGCGGCGCG TTTGAGCGCC
TATCCCGAGG GCAGGGGGGA CGAGGGAACC CAGGGGGTGG CCGGCCGCAC GCTGCGCTCG
GGCCGGGCGC AGAGCGATGA TGCCGGCGAA GGCTGGGCGG CCCCGACCTG GGCGCCGGGC
GTTCCCTTGG GGCGGGCCTA TTGTGTAGGG CTGCGCGCGC GCGGCGAGGT GGTGGCGGTT
TTGTGCCTGC GCGGCCATGG CGAGGCGCCC TCTCCCGCCC TGTCGCGCGC CCTGGAGGCC
CTGGGCCCCC GTCTGGGCGA GGCCATCGTC TACGAGCGCG GCCAATCCCT GATGCGCCTG
CAAAGCGCCG CCATCGCCGC CGCGGCCAAC GCCATCGTCA TCACCGATGG GGAAGGCCGG
GTGGAATGGG TCAACGAGGC CTATCATCTG CTGTCGGGCT ACGAGCGCGA TCAGATCATC
GGCACCCTCC CGGCCGTTCT CGCCGGGCCA TCGGCGGCGA ACCCGACGGC GATCGAAGCC
TGGCCGACGC TGCGCGCCGG TCAGGTGTGG CGCGGGGAAA TCCACGAAAC CCACCGTGAC
GGGCGGACCT ATATCGTTGA CAAGACGATC ACGCCGATCG TCGACGCTAG CGGCCGCCTC
AGCCATCTGG TCGCCGTCGA TGAGGATGTG ACGGCGCGCA AGAAGGCCGA GGAACGCATC
CGCTATCTAT CGAACTACGA TACCCTGACG CGGTTGCCCA ACCGCGTGCT GTTTCGCGAC
CGGCTTTATC AGGCCGTCGT CCAGGCCCGG CGCGGCCATG GCGGTCTGGC GGTGATGTTC
ATCGATCTTG ATCAGTTCAG TCTGGTCAAC GACACCTTGG GCCATGCCGC CGGCGATCAT
CTGCTGATGA CCATCGCCTC GCGCATCAAT GCCGCCGCCG AGGAGGCCGA TACGGTGGCC
CGGGTCGGCG GTGATGAATT CGCCCTGATC CAGACGGCGC TGACCAGCGC CGATTCCGCC
GCCTCGCTGG CCCGCCGGCT GATCGACGTC ATCCGCACCC CCGTTGATCT CGGGGGGCGC
GAAGTGGTGA TCGGCGCCAA TGTCGGCATC GCCATCTATC CCCAGGATGG CACCGATCCC
GATAATCTGA TGAAGAACGC CGATATGGCG ATGTATCGGG CGGTCAAGTC GGGCGATGAC
TCCTGCTGCT TCTTCTCCAA TGAAATGAAC GCCGAAGCCG CCGTTCGTCT CAGTTTGGAA
GAAGATCTGC GCCGGGCGCT CGACTCGGGC GATCAGCTGT TCTTGCACTA CCAGCTGCAG
TTCTGCATCG AAAGCGGCCG GCCGGTGGGG GCCGAAGCCC TGGCCCGCTG GACCCATCCG
ACGCTTGGCG CCATTCCGCC CACCCGCTTC ATTCCGGTGG CCGAAGACAG CGGGCTGATC
CTGGCCTTGG GCGATTGGGT GCTGGGAACC GCGCTCGCCG AATACGCCCG CTGGCGGGCG
GCGGGCTGCG GCCGGCTGAC CATCGCCGTC AATATGTCGG CCGTGCAGTT CCGCCAGAAG
GGGCTGGTCG AGCGGGTGAC CGACCTGCTC GCCCAGCATG GCGTGCCGCC CGAGGATCTG
GAACTGGAGC TGACGGAAAG CATGCTGATG CAAGACGCCG ATCAGGCGGT CGCCCAATTG
ACGGCGCTGT CGCAGGCCGG CATCCGCCTG TCGATCGACG ACTTCGGCAC CGGCTATTCC
TCGCTGGGCT ATCTGAAGCT GTTCCGGGTC GATAAATTAA AGGTCGATCA ATCCTTCGTC
CGCGACGTGA CCGAAGACGG CAACGACGCG GTGATCGCCC GCGCCATCAT CAACCTGGGC
CACAGCCTGG GTCTCGAGGT CATCGCCGAG GGGGTGGAAA CGCCCGAGCA GATGGCCTAT
CTGCGGCGCG AGGGCTGCGA TGTGGTTCAG GGCTACCTGA TGGCCTACCC CGAGCCCGGC
GAAACGGTGG CCCGGCGCCT TCTCGCCCTC GACGCCTTAA GCGCGGCGCC GGCGGCCGTC
GTCATGTCGC GTTCAGATTG A
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| Protein sequence | MTFEDPSFWA ALLTAATTAG AITILVALVR RNQAKGPDRR AREDAEIFLG LSDGLIVLDD
GGRVSALNRA AQRMTGQEGE AAVGKSARRL LPGLESVLEG KDRLASSLGL WCRLPATGRE
EALASTLGAL LSETTGPAGT RTVLVLRDIS EQIRLTEVDD WLRVIDGHLL AGTSLGDLAN
DLCERVARAF GLPLLWIGVP RPEGLLVVGK GGSEAARLSA YPEGRGDEGT QGVAGRTLRS
GRAQSDDAGE GWAAPTWAPG VPLGRAYCVG LRARGEVVAV LCLRGHGEAP SPALSRALEA
LGPRLGEAIV YERGQSLMRL QSAAIAAAAN AIVITDGEGR VEWVNEAYHL LSGYERDQII
GTLPAVLAGP SAANPTAIEA WPTLRAGQVW RGEIHETHRD GRTYIVDKTI TPIVDASGRL
SHLVAVDEDV TARKKAEERI RYLSNYDTLT RLPNRVLFRD RLYQAVVQAR RGHGGLAVMF
IDLDQFSLVN DTLGHAAGDH LLMTIASRIN AAAEEADTVA RVGGDEFALI QTALTSADSA
ASLARRLIDV IRTPVDLGGR EVVIGANVGI AIYPQDGTDP DNLMKNADMA MYRAVKSGDD
SCCFFSNEMN AEAAVRLSLE EDLRRALDSG DQLFLHYQLQ FCIESGRPVG AEALARWTHP
TLGAIPPTRF IPVAEDSGLI LALGDWVLGT ALAEYARWRA AGCGRLTIAV NMSAVQFRQK
GLVERVTDLL AQHGVPPEDL ELELTESMLM QDADQAVAQL TALSQAGIRL SIDDFGTGYS
SLGYLKLFRV DKLKVDQSFV RDVTEDGNDA VIARAIINLG HSLGLEVIAE GVETPEQMAY
LRREGCDVVQ GYLMAYPEPG ETVARRLLAL DALSAAPAAV VMSRSD
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