Gene Rru_A1798 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A1798 
Symbol 
ID3835220 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand
Start bp2091636 
End bp2093252 
Gene Length1617 bp 
Protein Length538 aa 
Translation table11 
GC content65% 
IMG OID637825895 
ProductType I secretion outer membrane protein, TolC 
Protein accessionYP_426885 
Protein GI83593133 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.99988 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTTTGCG TTGCACCCCT CTGGTGGTCG TGCATTCTTA CAAAAGGGGA GGCCACGCCT 
TTCCTTTGCG ACGATCTCCG TCTTGCCGTC CCCTTTGGGG CGCGGGCGGA GCGGGCGCCC
GAGCGGACCG TTTTCGAGGC CTTTCGAGAG AAACTCATGA TAAAGCCAGT ATCCATTGCC
GTTGCCTCCC TGCTGGTCGC CGGGCTCGGT CTGTCCTCGC CGGTCATGGC CGAAACCTTC
GACGAGGCCT TGGTTTCCGC CTATCAGGCC AATCCCACCT TGCAGGCGCG CCGCGCCCTG
CTGCGCGCCG TCGACGAACA GGTGCCCCAG GCGCTGTCGG ACTGGCGCCC CCAGGTCTCG
GTCCAGGGCT CGACTTTCTA TCAGCAAATG GATTACGAGC CCGGCCGCAA GAACCTCGAC
AACCGGCCCG CGACCCTGGG CGTGGTCCTT CAGCAAAACA TCTTCCGCGG CTTGCGGACG
GTGGCCCAGA CCGATCAGGC CAAGGCCCAG GTCCAGTCCG AGCGGGCGTT GCTGCGTTCG
GTCGAGCAGA CCGTGCTGCT CAATGCCGCC CAGGCCTATT TCAACGTGAT CCGCGATCAG
GCGGTTCTCG AATTGAACAT CAACAACGAA CAGGTTCTGC GCCGCCAGCT CGACGCGGCC
AATGACCGGT TCCGGGTCGG CGAGATCACC CGCACCGATG TCGCCCAGGC CGATTCGCGG
CTCGCCGGCG CCATCGCCGA TCGCATCCAG GCCGAGGGCA CGCTGGAAAG CAGCCGGGCC
AATTACACCC AGGTGGTCGG CCATCCGCCC GAGAACATCC AGCCGCCGCC GCCCTATGCC
CGTCTTCCCC AAACCCTGGA AGATGGCCTC AACACGGCGC TTTCGGCCAA TCCCGACGTC
ATCGCCGCCC TGTACGTCTG GCGTCAGGCC CAGGCCGCCA TCCGCGATCA GCGCGGCAAG
CTTCTGCCGA CGCTGAACGC CGAGGTGTCC TATAGTTTTT CGCATAATCC GTCGGCGACC
ACCGAATACG ACACCAAGAC CTTCCAGGCC GGCCTCAATC TGACGGTGCC ACTCTACCAG
GGTGGGGCGG TCTATTCGCA GATCCGTGAC GCCAAGCACC GCGCCGGTCA GCGCCGGCTG
CAGGTTGACG AGCAGCGCGA GGCGGTGATC GAATCCTTGA CCTCGGCCTG GGAAACCCTG
ACCTCGGCCC GCGCCCGGGT ATCGTCCTAT AAAAGCCAGA TCGAGGCGGC GGGGATCGCC
CTTGATGGGG TGCAGCGCGA GGCCCAGGTC GGGTCGCGCA CGGTGCTCGA CGTTCTCGAC
GCCGAGCAGG AGCTGCTGAC CTCGCGGGTC AATCTGGTGC GCGCCGAGCG GGATTCGGCG
ATTTCCACCT ATGAGGTGTT GGCCGCCCTT GGCGCGATGA CCGCCGAGGA TCTGGGGCTG
AACACGCCGC TCTATGACGC CACCGCCCAT TACAACGACG TGAAGGGGCA GTGGATCGGC
GGCAATGATC TGGCCAATCA GGACGAGGAT CTGATCGTCA AAACGGCGCC GCCGATCGAC
GGCGACAGTA TGACCCGTCC GGTGCGCGCC CTCGACAGCG CCACCGGAAC CCGCTAG
 
Protein sequence
MFCVAPLWWS CILTKGEATP FLCDDLRLAV PFGARAERAP ERTVFEAFRE KLMIKPVSIA 
VASLLVAGLG LSSPVMAETF DEALVSAYQA NPTLQARRAL LRAVDEQVPQ ALSDWRPQVS
VQGSTFYQQM DYEPGRKNLD NRPATLGVVL QQNIFRGLRT VAQTDQAKAQ VQSERALLRS
VEQTVLLNAA QAYFNVIRDQ AVLELNINNE QVLRRQLDAA NDRFRVGEIT RTDVAQADSR
LAGAIADRIQ AEGTLESSRA NYTQVVGHPP ENIQPPPPYA RLPQTLEDGL NTALSANPDV
IAALYVWRQA QAAIRDQRGK LLPTLNAEVS YSFSHNPSAT TEYDTKTFQA GLNLTVPLYQ
GGAVYSQIRD AKHRAGQRRL QVDEQREAVI ESLTSAWETL TSARARVSSY KSQIEAAGIA
LDGVQREAQV GSRTVLDVLD AEQELLTSRV NLVRAERDSA ISTYEVLAAL GAMTAEDLGL
NTPLYDATAH YNDVKGQWIG GNDLANQDED LIVKTAPPID GDSMTRPVRA LDSATGTR