Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rru_A1798 |
Symbol | |
ID | 3835220 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodospirillum rubrum ATCC 11170 |
Kingdom | Bacteria |
Replicon accession | NC_007643 |
Strand | - |
Start bp | 2091636 |
End bp | 2093252 |
Gene Length | 1617 bp |
Protein Length | 538 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637825895 |
Product | Type I secretion outer membrane protein, TolC |
Protein accession | YP_426885 |
Protein GI | 83593133 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.99988 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTTTGCG TTGCACCCCT CTGGTGGTCG TGCATTCTTA CAAAAGGGGA GGCCACGCCT TTCCTTTGCG ACGATCTCCG TCTTGCCGTC CCCTTTGGGG CGCGGGCGGA GCGGGCGCCC GAGCGGACCG TTTTCGAGGC CTTTCGAGAG AAACTCATGA TAAAGCCAGT ATCCATTGCC GTTGCCTCCC TGCTGGTCGC CGGGCTCGGT CTGTCCTCGC CGGTCATGGC CGAAACCTTC GACGAGGCCT TGGTTTCCGC CTATCAGGCC AATCCCACCT TGCAGGCGCG CCGCGCCCTG CTGCGCGCCG TCGACGAACA GGTGCCCCAG GCGCTGTCGG ACTGGCGCCC CCAGGTCTCG GTCCAGGGCT CGACTTTCTA TCAGCAAATG GATTACGAGC CCGGCCGCAA GAACCTCGAC AACCGGCCCG CGACCCTGGG CGTGGTCCTT CAGCAAAACA TCTTCCGCGG CTTGCGGACG GTGGCCCAGA CCGATCAGGC CAAGGCCCAG GTCCAGTCCG AGCGGGCGTT GCTGCGTTCG GTCGAGCAGA CCGTGCTGCT CAATGCCGCC CAGGCCTATT TCAACGTGAT CCGCGATCAG GCGGTTCTCG AATTGAACAT CAACAACGAA CAGGTTCTGC GCCGCCAGCT CGACGCGGCC AATGACCGGT TCCGGGTCGG CGAGATCACC CGCACCGATG TCGCCCAGGC CGATTCGCGG CTCGCCGGCG CCATCGCCGA TCGCATCCAG GCCGAGGGCA CGCTGGAAAG CAGCCGGGCC AATTACACCC AGGTGGTCGG CCATCCGCCC GAGAACATCC AGCCGCCGCC GCCCTATGCC CGTCTTCCCC AAACCCTGGA AGATGGCCTC AACACGGCGC TTTCGGCCAA TCCCGACGTC ATCGCCGCCC TGTACGTCTG GCGTCAGGCC CAGGCCGCCA TCCGCGATCA GCGCGGCAAG CTTCTGCCGA CGCTGAACGC CGAGGTGTCC TATAGTTTTT CGCATAATCC GTCGGCGACC ACCGAATACG ACACCAAGAC CTTCCAGGCC GGCCTCAATC TGACGGTGCC ACTCTACCAG GGTGGGGCGG TCTATTCGCA GATCCGTGAC GCCAAGCACC GCGCCGGTCA GCGCCGGCTG CAGGTTGACG AGCAGCGCGA GGCGGTGATC GAATCCTTGA CCTCGGCCTG GGAAACCCTG ACCTCGGCCC GCGCCCGGGT ATCGTCCTAT AAAAGCCAGA TCGAGGCGGC GGGGATCGCC CTTGATGGGG TGCAGCGCGA GGCCCAGGTC GGGTCGCGCA CGGTGCTCGA CGTTCTCGAC GCCGAGCAGG AGCTGCTGAC CTCGCGGGTC AATCTGGTGC GCGCCGAGCG GGATTCGGCG ATTTCCACCT ATGAGGTGTT GGCCGCCCTT GGCGCGATGA CCGCCGAGGA TCTGGGGCTG AACACGCCGC TCTATGACGC CACCGCCCAT TACAACGACG TGAAGGGGCA GTGGATCGGC GGCAATGATC TGGCCAATCA GGACGAGGAT CTGATCGTCA AAACGGCGCC GCCGATCGAC GGCGACAGTA TGACCCGTCC GGTGCGCGCC CTCGACAGCG CCACCGGAAC CCGCTAG
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Protein sequence | MFCVAPLWWS CILTKGEATP FLCDDLRLAV PFGARAERAP ERTVFEAFRE KLMIKPVSIA VASLLVAGLG LSSPVMAETF DEALVSAYQA NPTLQARRAL LRAVDEQVPQ ALSDWRPQVS VQGSTFYQQM DYEPGRKNLD NRPATLGVVL QQNIFRGLRT VAQTDQAKAQ VQSERALLRS VEQTVLLNAA QAYFNVIRDQ AVLELNINNE QVLRRQLDAA NDRFRVGEIT RTDVAQADSR LAGAIADRIQ AEGTLESSRA NYTQVVGHPP ENIQPPPPYA RLPQTLEDGL NTALSANPDV IAALYVWRQA QAAIRDQRGK LLPTLNAEVS YSFSHNPSAT TEYDTKTFQA GLNLTVPLYQ GGAVYSQIRD AKHRAGQRRL QVDEQREAVI ESLTSAWETL TSARARVSSY KSQIEAAGIA LDGVQREAQV GSRTVLDVLD AEQELLTSRV NLVRAERDSA ISTYEVLAAL GAMTAEDLGL NTPLYDATAH YNDVKGQWIG GNDLANQDED LIVKTAPPID GDSMTRPVRA LDSATGTR
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