| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A1792 |
|---|
| Symbol | |
|---|
| ID | 3835214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | - |
|---|
| Start bp | 2083507 |
|---|
| End bp | 2085249 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637825889 |
|---|
| Product | ABC transporter component |
|---|
| Protein accession | YP_426879 |
|---|
| Protein GI | 83593127 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01188] daunorubicin resistance ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.380874 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAGG ACTGCATTCG CCTTTCCGAT GTCAGCAAGC GCTTTGGGTC GGCGGCGCCG
GCGCTTGATC ACCTGTCGGG CCGGGTCGGC GGCGGCGAAA TCACCGGTCT GGTCGGTCCC
GATGGCGCGG GCAAAACCAC CTTACTGCGC CTGATGACCG GCCTTATGGT GCCCGATTCC
GGGTCGATCG AAGTTTTAGG CTTCGATACC CGACGCGAGC CGGCCGGACT CCAAGCCCAG
ATCGGCTATA TGCCCCAAAG ATTCGGGCTT TACGAGGATT TGTCCGTCCA GGAAAACCTC
GATCTTTACG CCGATATGCG CGGCCTTGCC TTGGTCGACC GTCCGGCGGC CTTTGCCGAG
CTTCTTCGCT TTACCGATCT CGCGCGCTTT ACCGGTCGCT TGGCGGGCAA ATTGTCGGGC
GGGATGAAGC AAAAACTTGG ATTGGCCTGC GCGCTGCTGA AAAAGCCCCG CTTGCTGCTT
CTTGATGAGC CGGGCGTCGG CGTCGATCCG ATTTCACGGC GCGATCTGTG GGCGATGGTC
AGGGATCTCA CCAAGGACGG CACCGGCGTG GTCTGGTCGA CGGCTTATCT TGAGGAGGCC
GAAGCCTGCG ACCGGGTTTT GCTGCTCAAC GGCGGAAAGC TGTTGTTTGC CGGACCACCC
GCGGACATGA GGGAGCGGGT CACGGGACGG GTGTTCAAGA TCACCGGGAT CAGCGGGCGG
CGGCGGCCGA TCCTCGCCCG GCTGCTCGAG CGCTCCGAGG TGATGGATGG TGTTATTCAA
GGCGAGGCGA TGCGCATCGT CGTCGGCCCC GGAGACAGGC CGGCGGCCCT GATCGACAGG
GCGATCGCCG GGCTTGACGC CGGGGCCCTC AGCGCCAAGC CGACCAGCCC CCGCTTCGAG
GATGCCTTTG TCGACATGCT TGGCGGTGGG CCGGGCGGGC GATCGAAGCT GGCCGAGGTG
GCGCGCACCC TTGATACCAC CGACCCCAAG CCGGTGATCG AGGCCCATGG CCTGACCAAG
CGCTTTGGCG ATTTCACGGC GGCCGACGAC ATCACCTTCG CCATTCCGCG CGGTCAGATT
TTCGGACTGC TTGGACCCAA TGGCGCGGGA AAATCGACCA CGTTCAAGAT GCTCTGCGGC
CTGTTGAAGC CGACGGCGGG GGAGGGCCGG GTCTCGGGCT ATGATTTGCG CCGCGAGAGC
GCCCAGGCGC GCAATCAATT GGGCTATATG GCGCAGAAGT TCTCGCTTTA TGGCGATCTT
AGCGTTGCCC AGAACCTGGA GTTCTTCGCC GGGGTCTATG GTCTGGCCGG CGCCCACAAG
ACTGAGCGCA TCGCCCTTTT GGGCGAGGTC TTCGATTTCG GACCTTATGG CGCGATGTCG
GCCAAGGACC TTCCTTTGGG GATCAAGCAA CGCTTGGCCC TGGCCTGCGC GGTGATCCAC
GAACCCGCCG CCCTGTTCCT TGATGAGCCG ACCTCGGGGG TCGATCCGAT CACCCGGCGG
GAATTCTGGA CCCATATCAA CGCCTTGGTC GAAAAGGGCA TCACCGTGCT GGTCACCACC
CATTTCATGG ACGAGGCCGA GTATTGCGAC CGCATCGCCT TGATCTACCA TGGCCGCTCC
ATCGCGCTTG GATCCCCGGG GGCATTGAAG GCGCGGGTCG CCACGCCCGA GGCGCCCGAC
CCGACGATGG AGGACGCCTT CATCGCCCTG ATCGGCGCCT CGGGGGCGGG GGGGCAATCA
TGA
|
|---|
| Protein sequence | MSEDCIRLSD VSKRFGSAAP ALDHLSGRVG GGEITGLVGP DGAGKTTLLR LMTGLMVPDS
GSIEVLGFDT RREPAGLQAQ IGYMPQRFGL YEDLSVQENL DLYADMRGLA LVDRPAAFAE
LLRFTDLARF TGRLAGKLSG GMKQKLGLAC ALLKKPRLLL LDEPGVGVDP ISRRDLWAMV
RDLTKDGTGV VWSTAYLEEA EACDRVLLLN GGKLLFAGPP ADMRERVTGR VFKITGISGR
RRPILARLLE RSEVMDGVIQ GEAMRIVVGP GDRPAALIDR AIAGLDAGAL SAKPTSPRFE
DAFVDMLGGG PGGRSKLAEV ARTLDTTDPK PVIEAHGLTK RFGDFTAADD ITFAIPRGQI
FGLLGPNGAG KSTTFKMLCG LLKPTAGEGR VSGYDLRRES AQARNQLGYM AQKFSLYGDL
SVAQNLEFFA GVYGLAGAHK TERIALLGEV FDFGPYGAMS AKDLPLGIKQ RLALACAVIH
EPAALFLDEP TSGVDPITRR EFWTHINALV EKGITVLVTT HFMDEAEYCD RIALIYHGRS
IALGSPGALK ARVATPEAPD PTMEDAFIAL IGASGAGGQS
|
|---|
| |