| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A1659 |
|---|
| Symbol | |
|---|
| ID | 3835078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 1950756 |
|---|
| End bp | 1952378 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637825753 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_426746 |
|---|
| Protein GI | 83592994 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.308639 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATCG ACAGCCGCGA TCGCATCGTT TTTGCCGCCG GTCCTTTCGA GGCGTTCATC
GATCGCCGGC AAGACGACCT GCGCGGCGAG GAGGTCGCGA CCCTGATGGT GCCCGAGGAC
CGGGTGCTGA TGGGCCAGTG TCTGAAGTTG GTGCGGCGCA AAGGGCGGGC CTCCGGCGAG
GTGGTCCGCC TTTACCGTCC CCGGGGGGCG CCGCTCTCCA TGGACTTCGC CGGCTACACC
CTTGATCAAC AAAGCTTCAT CGCCTTGCGC CTCACCTCTC ACCGTGGGTA TGGCGCGCGG
GACGGGATCC CCCGCGACCC GCAATCGGGG CTGCTTCCCC CCCAGGCCTT CAGCGAGCTT
GCCAGCGGCA AGATCAAGCA GAGCCAGGAG ACGGGGCAGG ATTTTGGCGT CACCGTCATC
GATCTGCCCG GCCTGGGCGG GCTGTGTGAC CGTCTGCCCT CTCCGGGCGC CCTTGGCCTT
TTGCGTTCGG TGGGGGCGAG TTTGCGGGCC TGCGCCTTCG ATGACAACAG CGCCACCGAA
ATCGCCCAGG GACGCTATGG GCTGGTTCAC GATGGCGCCG CCGATCTCGA GGCCCTGCGC
CACGATCTGT CTGAAATCGT CCGCCAGCAT GATCCCGACG GCGAGGAGGG GCGGGTTGAA
ACCTCGGCCA TCGATCTTGA GGGGATCGAC CAGATCGACG AAGGCGATCT GGCCAAGGGC
TTGATCTACG CCATCAATCA GTGCCAGCGC GCCGACGGCG CGGCGATCAG CCTGCGCATG
CTGTCAACGA GCATCCCCCA ACTGGTCCAC CAGGGGATCA ACGAGGTCGC GCTGTTTCGC
CGGGTGGTCG CCAACCGCAG CTTCGATATT GTCCTTCAAC CGATCGTCAG CCTATCGACG
GGCGATATCC ACCATTACGA GGCGCTGTGC CGCTTCGACT CCAGCCGCCC CGATCTGTCG
CCCTATCGCG CTATTACCTT CGCCGAGGAA ACCGGCCTGA TCCACGATTT CGATCTGGCG
ATGGCCGAAA AGGTGCTGGG CTGGCTGTCG GGCAAGCCGC GCAATTCCGA CGCCTATCGG
GTGGCGGTCA ATATCTCGGG GTTTTCCATC GGCGTGGACA GCTATGTGAA GGGGTTGCTC
GATCTGCTGC GCGCCGAGCC GTGGACCAAG GGCAAGATGC TGTTCGAGAT CACCGAATCC
TCGAAGATGA CCGATCTCGA TTCCGCTAAC AGCTTTATCG GCAGCCTGCG CGACAGCGGC
TATCAGGTCT GTCTGGATGA TTTCGGCGCC GGAGCGGCCA GTTTCCAGTA TCTGAGCGCC
CTTGAGGTCG ATGTGGTCAA GATCGACGGC AGCGCCGTTC GCAACGCCAT GCGCGGCCCC
AAGGGACTGG CCTTTCTCAG CGCCCTGACC GAATTATGTC GGCGCCTGGG GGTGACGACC
ATCGCCGAAA TGATCGACAC CAAGGAAAGT CTTGATTTCG TGCGCAGTTG CGGCTGCGAT
TTCGTTCAAG GCTATCTGTT CGGCCGTCCC TCGGCCGATC TCAAGTCGTT CCAGCCGTTA
CCCAATCTCG GGCTGTTGCG CGGCTCGCCC GACCGCTTGC GCGGCCGCGC CGGTCTGTCG
TAA
|
|---|
| Protein sequence | MQIDSRDRIV FAAGPFEAFI DRRQDDLRGE EVATLMVPED RVLMGQCLKL VRRKGRASGE
VVRLYRPRGA PLSMDFAGYT LDQQSFIALR LTSHRGYGAR DGIPRDPQSG LLPPQAFSEL
ASGKIKQSQE TGQDFGVTVI DLPGLGGLCD RLPSPGALGL LRSVGASLRA CAFDDNSATE
IAQGRYGLVH DGAADLEALR HDLSEIVRQH DPDGEEGRVE TSAIDLEGID QIDEGDLAKG
LIYAINQCQR ADGAAISLRM LSTSIPQLVH QGINEVALFR RVVANRSFDI VLQPIVSLST
GDIHHYEALC RFDSSRPDLS PYRAITFAEE TGLIHDFDLA MAEKVLGWLS GKPRNSDAYR
VAVNISGFSI GVDSYVKGLL DLLRAEPWTK GKMLFEITES SKMTDLDSAN SFIGSLRDSG
YQVCLDDFGA GAASFQYLSA LEVDVVKIDG SAVRNAMRGP KGLAFLSALT ELCRRLGVTT
IAEMIDTKES LDFVRSCGCD FVQGYLFGRP SADLKSFQPL PNLGLLRGSP DRLRGRAGLS
|
|---|
| |