| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A1544 |
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| Symbol | |
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| ID | 3834959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | + |
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| Start bp | 1818261 |
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| End bp | 1820555 |
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| Gene Length | 2295 bp |
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| Protein Length | 764 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637825634 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_426631 |
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| Protein GI | 83592879 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.210593 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGCGG ATGTCGTCTT TCCCGGGCTC TGCGTTTTTC TCTCGGCCGG TCTGCTGCTG
GCCCTTGTTC ATGGCCGGCG GGTCGGCCGG CGGGCCGATC GCCAGTGCCG TCATCTGGCG
GCGATCACCG ATACGATGTC GGAAGGCTTT TATGTGGTTG ATGGCGACGA CCGCATCGTC
ATGGCCAATG CCGCCGCCGG ACGCATTCTT GGCTATACCC AAGACGATCT GATCGGCGCT
TGCGCCCACG CGCTATTCCA TGCCCGCTCC GCCGATGATC CCGATCCGGT GCCGCTTGAG
GAGTGCCGGC TCAATCGCGC CGTGCGCGAG CGCCGCGCCG CCTTTCTGGA CGTCGGGCAT
TTCCGCCATC GTTCGGGCAA GATCATCGCC GTCGAGGTGT CATGTAACCC GGTGGCCGAC
ACCCTGGCCG AAGAGGGGCG CCGAGGCGGC CTGCTCGGCT GGTTGCTTGA TGGCGATGAC
GCCGAGGGGG CGCCGGGCGC CCTCTTGTCG ATGGTGACCT TCGTTGATAT CACCGCGCGG
CGCGAGTCCG AGGCGGCGGT GATCAAGCTA TCCCACGCTG TGGAGCAAAG CTCGGCCAGC
ATCGTCATCA CCGATGCCGA TGGCCGTATC GAATACGCCA ACCCGGCTTT CACCAAGATC
AGCGGCTATA CGGCGCAAGA GGCCATCGGT CGGCGGCCGA GCATCCTGAA ATCGGGCCTT
GTTCCGGCTG AAACCTATCG CGCCCTGTGG CAGACCATCA CCAATGGCGG CGAATGGCGC
GGCGAGTTTC ATAACCGGCG CAAGGACGGC ACGCTTTATT GGGAAATGGC CAGCATCTCG
CCCATTCGCG ACGCCCGGGG CAAGATCACC AATTTCGTCG CCGTCAAGGA TGACGTCACC
GAACGCAAGG CGATCGAAAG CGAGCTCTAC CACCGGGCCA ATTACGATGC CCTGACCGGC
CTGCCCAATC GACAACTGCT GCTTGACCGG GTGAGCACCG CCCTTGATCT CGCCCGTCGC
CATGACCGGC GGGTCGCCGT GATGTTCATG GATATCGACC GCTTCAAGCA GATCAACGAC
AGCATGGGCC ATGCGGCCGG CGACGTGCTG CTCAAACAGG CGGCCTCGCG GTTGGCGGCG
GTGTTGCGGC CCCAGGATAC CCTGGGGCGT TTGGGGGGCG ATGAATTCCT GGTGGTCGCC
CCGGGCCTGC GCTGGGAGAG CGAGGCGACG GCGCTGGCGT CGCGGTTGCT TGAAGTCGCC
CGCCGGCCGT TCACCATCGA TGGGCGCGAG GTTTATGTCT CGGTCAGCAT CGGCGTCAGC
CTGGGGCCGG TCGATGGCAC CACCGCCCAG GCCCTGATGC GCAACGCCGA TGCGGCGATG
TATCTGGCCA AGGGTGGCGG CCGCGACGCG GCGCATTTCT TCACCCCCGA TATCGAAGCG
GCGGCGCGGC GGCGGATGCT GATCGAAAAC GGCCTGCGCA CCGCCGTTAG CGATGGCAGC
CTTTATCTGG CCCTTCAGCC CATCATCGCC TGCGCCGATC ACACGATGAT CAAGGCCGAG
GCGCTGTTGC GCTGGACCCA TCCCCAATTG GGCGGCGTTC CCCCCAGCGA GTTCATTCCG
ATCGCCGAGG AAAGCGGCCT GATCCGCGCC ATCGGCGCCT GGGTGATCGA AGAGGCGGCC
CGGCTTCTGG TCTCTCTTGA TCCGCCCCGC GACGGCGCCT TCCGCCTGGG GATCAATATC
GCCAGCAGCC AGTTCACCGG CGGCCTGCAT CACCATGTCG CCGGGATGCT CGCCCGCTAT
GACCTGGATC CGCGCATGCT GGAAATCGAA ATCACCGAAC GCATGTTGCT TGATCCCTCG
CCGGCCATCC TGGAACAGGT CGACGCCCTG CGGGCGATGG GGGTCAGCAT CGCCATCGAC
GATTTCGGCA CCGGCTATTC GGCGCTGAGT TATCTCAGCG TCTTTCACGT CGATACCCTC
AAGATCGACC GCGCCTTCGT TTCGGTGATG ACCGACGAGG CGCGCTCGCA GGCGCTGATC
GGCGCGATCG TCGCCTTGGG CCACGAACTG GGCTGCGCCG TCGTGGCCGA AGGCGTGGAA
ACCGCCGATC AGGCGCGGCT GCTGGGCGAA TTGGCCGTCG ATGCCCTGCA GGGATATTTC
CTGGGCCGGC CGACCACCGC CGAGGCGATC AGCGATCGTC TGAACCCAGG GACTGGGCGC
CCTTATGACA AGGCCGCGCT GGGGACGGAG TTCGCCGAGG GCGGCGATCT TGGTCTTTCG
GTGGGGGCCC TTTAA
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| Protein sequence | MAADVVFPGL CVFLSAGLLL ALVHGRRVGR RADRQCRHLA AITDTMSEGF YVVDGDDRIV
MANAAAGRIL GYTQDDLIGA CAHALFHARS ADDPDPVPLE ECRLNRAVRE RRAAFLDVGH
FRHRSGKIIA VEVSCNPVAD TLAEEGRRGG LLGWLLDGDD AEGAPGALLS MVTFVDITAR
RESEAAVIKL SHAVEQSSAS IVITDADGRI EYANPAFTKI SGYTAQEAIG RRPSILKSGL
VPAETYRALW QTITNGGEWR GEFHNRRKDG TLYWEMASIS PIRDARGKIT NFVAVKDDVT
ERKAIESELY HRANYDALTG LPNRQLLLDR VSTALDLARR HDRRVAVMFM DIDRFKQIND
SMGHAAGDVL LKQAASRLAA VLRPQDTLGR LGGDEFLVVA PGLRWESEAT ALASRLLEVA
RRPFTIDGRE VYVSVSIGVS LGPVDGTTAQ ALMRNADAAM YLAKGGGRDA AHFFTPDIEA
AARRRMLIEN GLRTAVSDGS LYLALQPIIA CADHTMIKAE ALLRWTHPQL GGVPPSEFIP
IAEESGLIRA IGAWVIEEAA RLLVSLDPPR DGAFRLGINI ASSQFTGGLH HHVAGMLARY
DLDPRMLEIE ITERMLLDPS PAILEQVDAL RAMGVSIAID DFGTGYSALS YLSVFHVDTL
KIDRAFVSVM TDEARSQALI GAIVALGHEL GCAVVAEGVE TADQARLLGE LAVDALQGYF
LGRPTTAEAI SDRLNPGTGR PYDKAALGTE FAEGGDLGLS VGAL
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