Gene Rru_A1544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A1544 
Symbol 
ID3834959 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand
Start bp1818261 
End bp1820555 
Gene Length2295 bp 
Protein Length764 aa 
Translation table11 
GC content65% 
IMG OID637825634 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_426631 
Protein GI83592879 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.210593 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGCGG ATGTCGTCTT TCCCGGGCTC TGCGTTTTTC TCTCGGCCGG TCTGCTGCTG 
GCCCTTGTTC ATGGCCGGCG GGTCGGCCGG CGGGCCGATC GCCAGTGCCG TCATCTGGCG
GCGATCACCG ATACGATGTC GGAAGGCTTT TATGTGGTTG ATGGCGACGA CCGCATCGTC
ATGGCCAATG CCGCCGCCGG ACGCATTCTT GGCTATACCC AAGACGATCT GATCGGCGCT
TGCGCCCACG CGCTATTCCA TGCCCGCTCC GCCGATGATC CCGATCCGGT GCCGCTTGAG
GAGTGCCGGC TCAATCGCGC CGTGCGCGAG CGCCGCGCCG CCTTTCTGGA CGTCGGGCAT
TTCCGCCATC GTTCGGGCAA GATCATCGCC GTCGAGGTGT CATGTAACCC GGTGGCCGAC
ACCCTGGCCG AAGAGGGGCG CCGAGGCGGC CTGCTCGGCT GGTTGCTTGA TGGCGATGAC
GCCGAGGGGG CGCCGGGCGC CCTCTTGTCG ATGGTGACCT TCGTTGATAT CACCGCGCGG
CGCGAGTCCG AGGCGGCGGT GATCAAGCTA TCCCACGCTG TGGAGCAAAG CTCGGCCAGC
ATCGTCATCA CCGATGCCGA TGGCCGTATC GAATACGCCA ACCCGGCTTT CACCAAGATC
AGCGGCTATA CGGCGCAAGA GGCCATCGGT CGGCGGCCGA GCATCCTGAA ATCGGGCCTT
GTTCCGGCTG AAACCTATCG CGCCCTGTGG CAGACCATCA CCAATGGCGG CGAATGGCGC
GGCGAGTTTC ATAACCGGCG CAAGGACGGC ACGCTTTATT GGGAAATGGC CAGCATCTCG
CCCATTCGCG ACGCCCGGGG CAAGATCACC AATTTCGTCG CCGTCAAGGA TGACGTCACC
GAACGCAAGG CGATCGAAAG CGAGCTCTAC CACCGGGCCA ATTACGATGC CCTGACCGGC
CTGCCCAATC GACAACTGCT GCTTGACCGG GTGAGCACCG CCCTTGATCT CGCCCGTCGC
CATGACCGGC GGGTCGCCGT GATGTTCATG GATATCGACC GCTTCAAGCA GATCAACGAC
AGCATGGGCC ATGCGGCCGG CGACGTGCTG CTCAAACAGG CGGCCTCGCG GTTGGCGGCG
GTGTTGCGGC CCCAGGATAC CCTGGGGCGT TTGGGGGGCG ATGAATTCCT GGTGGTCGCC
CCGGGCCTGC GCTGGGAGAG CGAGGCGACG GCGCTGGCGT CGCGGTTGCT TGAAGTCGCC
CGCCGGCCGT TCACCATCGA TGGGCGCGAG GTTTATGTCT CGGTCAGCAT CGGCGTCAGC
CTGGGGCCGG TCGATGGCAC CACCGCCCAG GCCCTGATGC GCAACGCCGA TGCGGCGATG
TATCTGGCCA AGGGTGGCGG CCGCGACGCG GCGCATTTCT TCACCCCCGA TATCGAAGCG
GCGGCGCGGC GGCGGATGCT GATCGAAAAC GGCCTGCGCA CCGCCGTTAG CGATGGCAGC
CTTTATCTGG CCCTTCAGCC CATCATCGCC TGCGCCGATC ACACGATGAT CAAGGCCGAG
GCGCTGTTGC GCTGGACCCA TCCCCAATTG GGCGGCGTTC CCCCCAGCGA GTTCATTCCG
ATCGCCGAGG AAAGCGGCCT GATCCGCGCC ATCGGCGCCT GGGTGATCGA AGAGGCGGCC
CGGCTTCTGG TCTCTCTTGA TCCGCCCCGC GACGGCGCCT TCCGCCTGGG GATCAATATC
GCCAGCAGCC AGTTCACCGG CGGCCTGCAT CACCATGTCG CCGGGATGCT CGCCCGCTAT
GACCTGGATC CGCGCATGCT GGAAATCGAA ATCACCGAAC GCATGTTGCT TGATCCCTCG
CCGGCCATCC TGGAACAGGT CGACGCCCTG CGGGCGATGG GGGTCAGCAT CGCCATCGAC
GATTTCGGCA CCGGCTATTC GGCGCTGAGT TATCTCAGCG TCTTTCACGT CGATACCCTC
AAGATCGACC GCGCCTTCGT TTCGGTGATG ACCGACGAGG CGCGCTCGCA GGCGCTGATC
GGCGCGATCG TCGCCTTGGG CCACGAACTG GGCTGCGCCG TCGTGGCCGA AGGCGTGGAA
ACCGCCGATC AGGCGCGGCT GCTGGGCGAA TTGGCCGTCG ATGCCCTGCA GGGATATTTC
CTGGGCCGGC CGACCACCGC CGAGGCGATC AGCGATCGTC TGAACCCAGG GACTGGGCGC
CCTTATGACA AGGCCGCGCT GGGGACGGAG TTCGCCGAGG GCGGCGATCT TGGTCTTTCG
GTGGGGGCCC TTTAA
 
Protein sequence
MAADVVFPGL CVFLSAGLLL ALVHGRRVGR RADRQCRHLA AITDTMSEGF YVVDGDDRIV 
MANAAAGRIL GYTQDDLIGA CAHALFHARS ADDPDPVPLE ECRLNRAVRE RRAAFLDVGH
FRHRSGKIIA VEVSCNPVAD TLAEEGRRGG LLGWLLDGDD AEGAPGALLS MVTFVDITAR
RESEAAVIKL SHAVEQSSAS IVITDADGRI EYANPAFTKI SGYTAQEAIG RRPSILKSGL
VPAETYRALW QTITNGGEWR GEFHNRRKDG TLYWEMASIS PIRDARGKIT NFVAVKDDVT
ERKAIESELY HRANYDALTG LPNRQLLLDR VSTALDLARR HDRRVAVMFM DIDRFKQIND
SMGHAAGDVL LKQAASRLAA VLRPQDTLGR LGGDEFLVVA PGLRWESEAT ALASRLLEVA
RRPFTIDGRE VYVSVSIGVS LGPVDGTTAQ ALMRNADAAM YLAKGGGRDA AHFFTPDIEA
AARRRMLIEN GLRTAVSDGS LYLALQPIIA CADHTMIKAE ALLRWTHPQL GGVPPSEFIP
IAEESGLIRA IGAWVIEEAA RLLVSLDPPR DGAFRLGINI ASSQFTGGLH HHVAGMLARY
DLDPRMLEIE ITERMLLDPS PAILEQVDAL RAMGVSIAID DFGTGYSALS YLSVFHVDTL
KIDRAFVSVM TDEARSQALI GAIVALGHEL GCAVVAEGVE TADQARLLGE LAVDALQGYF
LGRPTTAEAI SDRLNPGTGR PYDKAALGTE FAEGGDLGLS VGAL