Gene Rru_A1272 details

Gene Information

• Locus tag: Rru_A1272
• ID: 3833580
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodospirillum rubrum ATCC 11170
• Kingdom: Bacteria
• Replicon accession: NC_007643
• Strand: +
• Start bp: 1495736
• End bp: 1497634
• Gene Length: 1899 bp
• Protein Length: 632 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637825362
• Product: diguanylate cyclase
• Protein accession: YP_426360
• Protein GI: 83592608
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0623275
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACGCG TTCCATGGGT GGTCGGTGGC CTGATCCTGA TCATGGCATA TAATGCGGCG 
CTCGGGACCT TGGCTTATTG GCAGCGGCGC GACATTATCG ATGAATCCTT GCGGGAAGCG 
GTTGTCGTCG CCGATATTCT TGTCCGCGAG GTCGAAGCCA ACCTGGATCG GATTGATCGT 
ACTTTATCGG GGCTGACCGA GGTCTTGCGG GCTTATCCGA GCGCGATCGA TGTCCATGAT 
CCGTTTACCC ACCGCCTGCT GTTGCGTCGT CACGCCATCA CGCCGTCTTT GGCGGCGCTG 
TTTCTGATCG GTGGCGACGG CAGGCTGCGC AACGCCTCGC TGACGGATAA GGTCTCGGAA 
ATCGATGTGT CGGGCGAAGA TTATTTCGCC TTCCATCTGT CCAATGTGGA CGATGAGTTT 
TTCATCGGCG CGGTCACCAC CAATCGTCTC GATAAAAGCT GGGTCATCCC GGTGAGCCGG 
GCGGTGAGGG ATTCCTTTGG TCGGCTGACC GGGGTGGTCG CCGCGACGAT CACCACCGAT 
TCCATCGATC AGATGATCCA CTCCCATCAG CTTTCCGAAG GTTTCGCGGT GACGATCACC 
CAGCGCGACG CCGGGATGAT CGGCTGCCTT GGCTTTACGC GGTGTTGGGG CGAGGGCGCG 
CCGCACAGGG GCGACGAGGG GCTTGCTGAA AGCGGAGGCA GCGGCGAGGA GGTCCATTAC 
CTGCCCAATG GGCCGGGAGT CGGCGCCTTC CTTCGGGGTC CGACTTACGG CGTCGAGGTG 
ACCGTTCAGG CCAGCGATCG GACGCTTCTT CAGCCTTGGC GGGAAAAACT GGCCTTTATC 
CTGGTGCTGC AGGTCTTTGG CACCCTCGGC CTCGGGTTCG GCATCACCTC GCTTTATTAT 
CAGATGCATC ATCGCCGCGT ATCGCTGTTG GATCTGGAAC GCGCCAATGC GTCGCTGGAA 
AGCAAGGTGG CCGAGCGCAC GCGGCAATTG GCCGAAGGCG AGGAGCGGAT GCGCGGCTTC 
ATCATGGCGG CCCGCGACGC CGTGGTCATC ATCGATCAAA AGGGCATCAT CAGCGAATTC 
AACCCCTCGG CGACCGAACT ATTCGGCTAT GACGTCGAGG AGGTGCGCGG TCAAAGCGTC 
AATATGCTGA TGCCCGCGAC CTACGCGCGC GATCACGACG GCCACCTGCG CAAGGGCAAG 
CCCTCCGGCC AGCGCGCCAT TGGGCGGGGG CGCGAAATGA TCGGCCGACG CAAGAACGGC 
AGCGAATTTC CGATCGAATT GACGGTCGGC ACCCAGTCCT TCGATGGAAC CCGGGTTCAT 
ATCGGGGTGA TCCGCGATAT CACCGAACGC AAGGCCACCG AGGAAACCCT GCGGCGGCTG 
GCCAATATCG ACGGTTTGAC GGGGGTGCTC AATCGCCGCT CCTTCACCGA GGAAAGCGAA 
TTATTGTTGT CGCTGGCCAA CCGCCATGGC CGCCGTCTGT CGATGATGAT CGTCGATGCC 
GATCACTTCA AAGGGGTCAA CGATACCTAT GGTCACGACG CCGGCGACAG GGTGCTGAAG 
GCCCTGACCG GGGAAATCGC CGGCGTCTTG CGCAAAACCG ATCTGCTGGG ACGCATCGGC 
GGCGAGGAAT TCGCCATCCT GCTGCCCGAA ACCGACCAGG AGGGCGCCGA GGGACTGGCT 
TGGCGGGTGG TTCTAGCCAT TCGCGCCCTG GAGGTTCCCT TGCCCGAGGG CGGGGTGTTG 
AAGGTCACCG TCAGCGTGGG GGTCAGTTGC CGGAACACCG AGGCGGCGAC CTTCGATTGG 
ATGCTCAAGG AGGCCGACAC GGCCCTGTAC GCCGCCAAGC ATGGCGGCCG GGATCGCGTG 
GCCTGCTTTG GGCAAACCCA ATCGGTGGCC AGATCCTGA 

 

Protein sequence

MKRVPWVVGG LILIMAYNAA LGTLAYWQRR DIIDESLREA VVVADILVRE VEANLDRIDR 
TLSGLTEVLR AYPSAIDVHD PFTHRLLLRR HAITPSLAAL FLIGGDGRLR NASLTDKVSE 
IDVSGEDYFA FHLSNVDDEF FIGAVTTNRL DKSWVIPVSR AVRDSFGRLT GVVAATITTD 
SIDQMIHSHQ LSEGFAVTIT QRDAGMIGCL GFTRCWGEGA PHRGDEGLAE SGGSGEEVHY 
LPNGPGVGAF LRGPTYGVEV TVQASDRTLL QPWREKLAFI LVLQVFGTLG LGFGITSLYY 
QMHHRRVSLL DLERANASLE SKVAERTRQL AEGEERMRGF IMAARDAVVI IDQKGIISEF 
NPSATELFGY DVEEVRGQSV NMLMPATYAR DHDGHLRKGK PSGQRAIGRG REMIGRRKNG 
SEFPIELTVG TQSFDGTRVH IGVIRDITER KATEETLRRL ANIDGLTGVL NRRSFTEESE 
LLLSLANRHG RRLSMMIVDA DHFKGVNDTY GHDAGDRVLK ALTGEIAGVL RKTDLLGRIG 
GEEFAILLPE TDQEGAEGLA WRVVLAIRAL EVPLPEGGVL KVTVSVGVSC RNTEAATFDW 
MLKEADTALY AAKHGGRDRV ACFGQTQSVA RS