| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A1187 |
|---|
| Symbol | trmD |
|---|
| ID | 3834697 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodospirillum rubrum ATCC 11170 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007643 |
|---|
| Strand | + |
|---|
| Start bp | 1404850 |
|---|
| End bp | 1405569 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637825276 |
|---|
| Product | tRNA (guanine-N(1)-)-methyltransferase |
|---|
| Protein accession | YP_426275 |
|---|
| Protein GI | 83592523 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.148273 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGC GCGCCGTCGT TCTGACCCTG TTTCCCGAGA TGTTTCCCGG ACCGCTTGGT
CATTCCATCG CCGGCAAGGC CTTGGAAACC GGCGCTTGGA GCATCGAGGC CGTCGATATC
CGGTCGTTTG CCACCGACCG TCACCATACG GTGGACGACA GTCCCTTTGG CGGTGGCGCC
GGCATGGTCA TGCGTCCCGA CGTGGTGGAT GCGGCGATCG CCGCATCCTG GCCGGGCGAT
GGTCCGCTGG TCTATCTGAC CCCGCGGGGC CGGGTGCTTG ATCAGGCCCT GGTGCGCGAG
TTGGCGCAGG CCCCGTCGTT GACCCTGCTG TGCGGACGCT ATGAGGGCGT CGATCAGCGG
GTGCTTGACG AACGGGGGAT GCTGGAGATC AGCATCGGCG ACTATGTCCT GTCCGGTGGA
GAGGCGGCCG CCCAGGTCCT GCTTGACGCG GTGGTGCGGC TGCTTCCGGG AGTCGTCGGC
AAGACGGAAT CCCTTGAAGA CGAGAGTTTC GAGCGGGGAC TCCTCGAGTA TCCCCATTAT
ACGCGGCCCG CCGAATGGCG GGGCCGCACG GTACCCGAGG TTCTGACCTC GGGCCACCAT
CAGAAGGTTT CCGACTGGCG ACAGGCCCGG TCGGAGGAGA TCACCCAGAC GCGGCGGCCG
GACCTGTGGG CCCGCTATGT CGCCGCGCGG ACTTCCCTTG ATAGAGGATG CGGACAATGA
|
|---|
| Protein sequence | MSLRAVVLTL FPEMFPGPLG HSIAGKALET GAWSIEAVDI RSFATDRHHT VDDSPFGGGA
GMVMRPDVVD AAIAASWPGD GPLVYLTPRG RVLDQALVRE LAQAPSLTLL CGRYEGVDQR
VLDERGMLEI SIGDYVLSGG EAAAQVLLDA VVRLLPGVVG KTESLEDESF ERGLLEYPHY
TRPAEWRGRT VPEVLTSGHH QKVSDWRQAR SEEITQTRRP DLWARYVAAR TSLDRGCGQ
|
|---|
| |