| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rru_A1183 |
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| Symbol | dapF |
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| ID | 3834693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodospirillum rubrum ATCC 11170 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007643 |
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| Strand | - |
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| Start bp | 1400873 |
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| End bp | 1401715 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637825272 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_426271 |
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| Protein GI | 83592519 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.147631 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCATAC GTGGCACCCA TTTCCTGAAA ATGCACGGCC TGGGCAACGA TTTTATCGTG
ATCGACGCCC GGACCCGTCC GCTCGACCTG ACGCCCGAGC GCGTCCGCGC CTTGGCCGAC
CGGCATTCGG GGGTGGGCTG CGATCAGTTC GTCACCATCG AACCGGCGCG TGGTGGCGGC
GTCGCCTTCA TGGGCCTGCG CAACGCCGAT GGCGAAATCG TCGAAAGCTG TGGCAACGCC
TCGCGCTGCG TCGGCCGCCT GCTGCTTGAG GAACGCGAAG CCGAAAGCGT TCTGATCGAA
ACCCTGGGCG GCATGGTCGA AGCCCGCCGG GCCAGTGGCG AGTTGATCGA GGTCGACATG
GGCCCGGCCC GTCTGACCTG GCAAGAGATC CCGCTGGCCG GGGCGGCCGA TACCCTCCAC
ATCGAGCTGA GCGTCGGCCC GTTGAGCGAC CCCTGCGCCG TATCGATGGG CAATCCCCAT
GCGGTGTTCT TCGTTGACGA CGCCGACGCC ATCGACCTCG CCACCTGGGG TCCGCTGATC
GAGCACCATG GCCTGTTCCC CAATCGCACC AATGTCGAAG CCGTTCACCT CCGCGCCGAT
GGCCGTTTGC GCATGCGGGT ATGGGAACGC GGCGTCGGCA TCACCCGAGC CTGCGGCACC
GGCGCCTGCG CCAGCGCCGT GGCCGCCATG CGGCGCGGCT TGATCGCCGG CCGCACCGCC
GAGGTCGTTC TCGATGGCGG CACGCTTGGC ATCGTCTGGC GCGAAAGCGA CGGCCATGTG
CTGATGACCG GCAGTGCCAC CCTGGCCTAT TCGGGGGTCC TGGACGAAGG AGCCTGGGCA
TGA
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| Protein sequence | MSIRGTHFLK MHGLGNDFIV IDARTRPLDL TPERVRALAD RHSGVGCDQF VTIEPARGGG
VAFMGLRNAD GEIVESCGNA SRCVGRLLLE EREAESVLIE TLGGMVEARR ASGELIEVDM
GPARLTWQEI PLAGAADTLH IELSVGPLSD PCAVSMGNPH AVFFVDDADA IDLATWGPLI
EHHGLFPNRT NVEAVHLRAD GRLRMRVWER GVGITRACGT GACASAVAAM RRGLIAGRTA
EVVLDGGTLG IVWRESDGHV LMTGSATLAY SGVLDEGAWA
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