Gene Rru_A1117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRru_A1117 
Symbol 
ID3833424 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodospirillum rubrum ATCC 11170 
KingdomBacteria 
Replicon accessionNC_007643 
Strand
Start bp1312016 
End bp1313119 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content65% 
IMG OID637825206 
Productsecretion protein HlyD 
Protein accessionYP_426205 
Protein GI83592453 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGCCGC CCGCGGTCGG CGTCATGACG ATCGAAGCAA GGCCTCTCGC CGTCATGAAT 
GAACTGCCCG GCCGGATCGC CGCAACACGC GTTTCCGAGG TTCGCGCCCA AGTGTCGGGC
ATCCTGCAGG AGCGTGTCTT TACACAGGGC ACGCCCGTCA CGAAAGGGGA CGTTCTCTAT
CGGATCGACG CCCGTCTGTT CCGCGCTCGC GTCGCGAGCG CGGAGGCTTC GCTGGCGCGT
GCGCGTTCGA CGCTGACAAA CGCCCGTAAC CAGATGTCCC GCCAGGAATC CTTGCGCAAG
AGTAACGTCA CCAGCGGGGC TCAATACGAG GCGGCGGTCG CCGCCCTGGA GCAGGCCAAT
GCAGACGTCG CCTTTGCGCA AGCCGCCTTG GACGAGGCGA GGATCAATCT CGCCTATACT
GACGTGCGAG CGCCGATCAG CGGCATCATC GGCGCGGCCC TGGTCACCGA GGGCGCGTTG
GTGACGGCTG ACGGTTCGCA GAATTTAGCG CTGATCCAGC AGATCGACCC GGTTTACGCG
GATTTCACGC AGTCGGCGCA GCAGCTTCTC GCCCTCCGGC GTGCTGTCAA CGAAGGCAAG
CTGGCGTTTC CGGCTCCCGG CGAAGCCCGT GTCGAACTTC TGTTCGATGA CGACTCGGTC
TATTCGAAGC CGGGGCGGCT GCTGTTCGCC AGCGCCAGCG TCGACGCCAC GACCGGCCAG
GTGACCCTGC GCGCGGAATT CCCGAACTCA GATGGCGACC TCCTGCCGGG CATGTATGTG
CGCGTTCGTG TCGAGCAGGC CGTGCACCAG CATGCCATCA CCATTCCTCA GCGGGCGGTG
CTGCGGACGC AAGATGGCCG GGCTCAGGTC TATGTCGTCT CGGCGGACGA TACCGCCGTC
GCGCGTGAGG TCAGGCTTGG ACAGGTGCAA AACGATGAGT GGCTCGTCGA AGCCGGGCTG
AAAGCCGGCG AGCGCGTGGT TATCGATGGC GTTCAAAAGG TCGTTGCAGG AGGGAAGGTC
GCGGCGGAGC CGTGGAATCC TGCCGCCACC AACCAAAAAT CGGCGGCGCA ACAGGAAAGA
GCGCCTGACC AACCAGCGCA ATAG
 
Protein sequence
MPPPAVGVMT IEARPLAVMN ELPGRIAATR VSEVRAQVSG ILQERVFTQG TPVTKGDVLY 
RIDARLFRAR VASAEASLAR ARSTLTNARN QMSRQESLRK SNVTSGAQYE AAVAALEQAN
ADVAFAQAAL DEARINLAYT DVRAPISGII GAALVTEGAL VTADGSQNLA LIQQIDPVYA
DFTQSAQQLL ALRRAVNEGK LAFPAPGEAR VELLFDDDSV YSKPGRLLFA SASVDATTGQ
VTLRAEFPNS DGDLLPGMYV RVRVEQAVHQ HAITIPQRAV LRTQDGRAQV YVVSADDTAV
AREVRLGQVQ NDEWLVEAGL KAGERVVIDG VQKVVAGGKV AAEPWNPAAT NQKSAAQQER
APDQPAQ